C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat domain 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026019 Wdr12 10090 - 1:60069785-60098645 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027173 Wdr12-001 60069785-60097908 protein_coding
  ENSMUST00000117438 Wdr12-002 60076868-60098645 protein_coding
  ENSMUST00000122038 Wdr12-003 60076868-60098146 protein_coding
  ENSMUST00000133767 Wdr12-006 60093998-60097697 retained_intron
  ENSMUST00000136461 Wdr12-008 60083795-60085939 processed_transcript
  ENSMUST00000141417 Wdr12-005 60088041-60098135 protein_coding
  ENSMUST00000143342 Wdr12-004 60088041-60098125 protein_coding
  ENSMUST00000147413 Wdr12-007 60083085-60085762 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027173ENSMUST00000117438ENSMUST00000122038ENSMUST00000141417ENSMUST00000143342
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027173 0.703±0.04 0.607±0.17 1.318±0.51 0.362±0.05 0.277±0.00 0.228±0.06 0.304±0.02 0.994±0.51 0.300±0.05 0.345±0.08 0.614±0.03 0.562±0.05 N/A
ENSMUST00000117438 2.165±0.43 1.146±0.00 1.850±0.00 1.346±0.42 0.545±0.05 1.823±0.23 1.359±0.30 1.738±0.92 1.198±0.43 3.093±0.41 1.568±0.41 1.869±0.59 20.127±2.04
ENSMUST00000122038 1.760±0.06 3.378±1.06 4.181±0.94 2.578±0.00 0.588±0.00 1.455±0.00 0.887±0.10 3.433±3.51 0.852±0.09 1.150±0.03 2.972±0.94 4.322±2.80 11.336±5.77
ENSMUST00000141417 N/A N/A 19.121±0.00 N/A N/A N/A 2.791±0.00 2.607±0.00 N/A N/A 21.588±0.00 27.731±19.76 73.122±0.00
ENSMUST00000143342 5.254±0.17 N/A N/A N/A N/A N/A 3.282±0.48 3.225±0.67 N/A N/A 3.737±0.00 N/A 39.188±8.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020R CIL_00020R_0002 CGP 1:59982490-60098645
CIL_00020W CIL_00020W_0002 CGP 1:60069785-60153953

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000463 ISS maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 ISS maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005730 ISS nucleolus
GO:0007219 IPI Notch signaling pathway
GO:0008283 ISS cell proliferation
GO:0030687 ISS preribosome, large subunit precursor
GO:0043021 IEA ribonucleoprotein complex binding
GO:0070545 ISS PeBoW complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003287 wdr12 WD repeat domain 12 protein_coding Danio_rerio
ENSG00000138442 WDR12 WD repeat domain 12 protein_coding Homo_sapiens

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