C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type V, alpha 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026042 Col5a2 10090 - 1:45374321-45503282 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000086430 Col5a2-001 45374321-45503282 protein_coding
  ENSMUST00000131535 Col5a2-004 45417474-45422411 retained_intron
  ENSMUST00000134681 Col5a2-002 45414199-45503282 retained_intron
  ENSMUST00000150143 Col5a2-003 45389031-45393634 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086430
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086430 22.752±1.15 1.624±0.42 21.908±2.12 4.429±2.88 18.002±4.31 9.133±2.35 4.432±0.45 3.649±0.28 1.907±1.52 8.971±1.07 2.841±0.45 9.661±2.48 11.971±6.06 0.555±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004J6 CIL_0004J6_0002 CGP 1:45311538-45503282
CIL_0000Q1 CIL_0000Q1_0002 CGP 1:45374321-45823619

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001503 IEA ossification
GO:0005201 IEA extracellular matrix structural constituent
GO:0005581 IDA collagen trimer
GO:0005588 IEA collagen type V trimer
GO:0030199 IMP collagen fibril organization
GO:0031012 IDA extracellular matrix
GO:0043588 IMP skin development
GO:0046332 IPI SMAD binding
GO:0046872 IEA metal ion binding
GO:0048592 IEA eye morphogenesis
GO:0071230 IDA cellular response to amino acid stimulus
GO:1903225 IEA negative regulation of endodermal cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024847 col5a2b collagen, type V, alpha 2b protein_coding Danio_rerio
ENSDARG00000031678 COL5A2 (2 of 2) collagen, type V, alpha 2 protein_coding Danio_rerio
ENSG00000204262 COL5A2 collagen, type V, alpha 2 protein_coding Homo_sapiens

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