C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004J6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168542-ENSG00000204262 CGP 9606 2:188974320-189179879
GeneTranscriptPositionBiotype
ENSG00000168542 (COL3A1)
collagen, type III, alpha 1 		ENST00000304636 (COL3A1-001) 188974320-189012746 protein_coding
ENST00000317840 (COL3A1-201) 188974386-189012051 protein_coding
ENST00000450867 (COL3A1-004) 188991674-188994308 protein_coding
ENST00000467886 (COL3A1-005) 189003423-189003917 retained_intron
ENST00000470167 (COL3A1-003) 188974394-188985212 retained_intron
ENST00000487010 (COL3A1-002) 189008302-189012048 retained_intron
ENSG00000204262 (COL5A2)
collagen, type V, alpha 2 		ENST00000374866 (COL5A2-001) 189031896-189179879 protein_coding
ENST00000470524 (COL5A2-002) 189056766-189063038 retained_intron
ENST00000618828 (COL5A2-201) 189031915-189179879 protein_coding
ENSG00000228073 (AC133106.2)
 ENST00000419029 (AC133106.2-001) 189095063-189096158 antisense
CIL_0004J6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026043-ENSMUSG00000026042 CGP 10090 1:45311538-45503282
GeneTranscriptPositionBiotype
ENSMUSG00000026042 (Col5a2)
collagen, type V, alpha 2 		ENSMUST00000086430 (Col5a2-001) 45374321-45503282 protein_coding
ENSMUST00000131535 (Col5a2-004) 45417474-45422411 retained_intron
ENSMUST00000134681 (Col5a2-002) 45414199-45503282 retained_intron
ENSMUST00000150143 (Col5a2-003) 45389031-45393634 retained_intron
ENSMUSG00000026043 (Col3a1)
collagen, type III, alpha 1 		ENSMUST00000087883 (Col3a1-001) 45311538-45349706 protein_coding
ENSMUST00000123204 (Col3a1-003) 45327589-45328894 retained_intron
ENSMUST00000129611 (Col3a1-002) 45311538-45325018 retained_intron
ENSMUST00000185687 (Col3a1-006) 45335766-45340674 protein_coding
ENSMUST00000186021 (Col3a1-007) 45339958-45347766 protein_coding
ENSMUST00000189818 (Col3a1-004) 45311647-45317003 processed_transcript
ENSMUST00000190943 (Col3a1-005) 45334200-45337297 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004J6_0001ENSG00000168542ENST00000304636ENST00000317840ENST00000450867ENST00000467886ENST00000470167ENST00000487010ENSG00000204262ENST00000374866ENST00000470524ENST00000618828ENSG00000228073ENST00000419029CIL_0004J6_0002ENSMUSG00000026042ENSMUST00000086430ENSMUST00000131535ENSMUST00000134681ENSMUST00000150143ENSMUSG00000026043ENSMUST00000087883ENSMUST00000123204ENSMUST00000129611ENSMUST00000185687ENSMUST00000186021ENSMUST00000189818ENSMUST00000190943
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004J6_0001ENSG00000168542ENST00000304636ENST00000317840ENSG00000204262ENST00000374866ENST00000618828ENSG00000228073ENST00000419029CIL_0004J6_0002ENSMUSG00000026042ENSMUST00000086430ENSMUSG00000026043ENSMUST00000087883ENSMUST00000129611
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000168542 ENST00000304636 23.829±0.00 76.958±0.00 4.906±0.00 0.340±0.02 181.968±69.61 44.773±4.53 10.729±6.29 18.310±11.81 40.601±27.18 18.316±7.35 5.658±4.63 175.058±120.06 454.885±109.49 43.476±33.07
ENST00000317840 22.121±0.00 47.030±0.00 N/A 0.392±0.00 198.404±0.00 34.313±0.00 8.945±7.44 20.793±0.00 11.131±0.00 21.587±0.00 3.138±2.07 97.445±8.42 229.796±100.63 17.794±8.99
ENST00000450867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000204262 ENST00000374866 10.323±0.00 3.680±0.00 0.527±0.00 0.980±0.17 18.175±5.97 2.393±1.64 2.282±1.19 2.735±0.42 5.045±3.89 3.784±2.37 0.206±0.00 6.055±3.36 10.585±4.66 3.239±0.00
ENST00000470524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618828 N/A 0.987±0.00 N/A 0.574±0.00 N/A N/A N/A N/A 0.341±0.00 1.927±0.00 0.228±0.00 15.474±0.00 36.950±0.00 2.442±0.00
ENSG00000228073 ENST00000419029 N/A 0.030±0.00 N/A N/A N/A 0.691±0.00 0.344±0.00 N/A 0.183±0.00 N/A N/A 0.231±0.02 N/A 0.152±0.09
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026042 ENSMUST00000086430 22.752±1.15 1.624±0.42 21.908±2.12 4.429±2.88 18.002±4.31 9.133±2.35 4.432±0.45 3.649±0.28 1.907±1.52 8.971±1.07 2.841±0.45 9.661±2.48 11.971±6.06 0.555±0.23
ENSMUST00000131535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026043 ENSMUST00000087883 179.899±91.96 6.140±2.26 402.989±70.78 38.193±6.54 144.482±65.48 82.701±28.51 20.942±4.00 12.126±4.20 10.355±7.44 47.995±9.08 13.687±3.72 80.539±44.78 91.075±45.09 4.686±1.16
ENSMUST00000123204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129611 N/A 6.971±0.29 N/A N/A N/A N/A N/A N/A N/A N/A N/A 60.903±0.00 N/A N/A
ENSMUST00000185687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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