C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: translin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026374 Tsn 10090 - 1:118294778-118311739 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027623 Tsn-001 118294778-118311416 protein_coding
  ENSMUST00000186163 Tsn-004 118310681-118311739 retained_intron
  ENSMUST00000186608 Tsn-003 118299650-118310237 retained_intron
  ENSMUST00000188512 Tsn-006 118300889-118309986 retained_intron
  ENSMUST00000188882 Tsn-005 118308707-118311236 retained_intron
  ENSMUST00000189768 Tsn-002 118304691-118311462 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027623ENSMUST00000186163ENSMUST00000186608ENSMUST00000188512ENSMUST00000188882
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027623 3.041±0.68 1.856±0.30 1.329±0.33 6.375±4.23 2.583±1.02 1.065±0.27 2.456±0.10 3.554±0.44 3.377±1.90 3.086±0.73 0.872±0.08 2.936±1.25 3.423±1.26 1.228±0.28
ENSMUST00000186163 N/A 5.579±0.80 N/A N/A 3.524±0.37 2.259±0.55 4.785±0.00 N/A N/A 3.883±0.01 N/A 4.965±1.17 N/A N/A
ENSMUST00000186608 4.808±1.66 5.230±0.95 N/A 11.177±0.00 3.681±0.62 2.700±0.78 2.950±0.53 4.590±0.71 4.717±1.83 5.933±0.63 N/A 4.063±0.94 5.334±2.51 2.050±0.78
ENSMUST00000188512 10.756±3.82 N/A N/A N/A 11.673±0.11 N/A 9.717±0.54 9.122±0.00 11.887±6.33 N/A N/A 24.507±2.10 19.605±6.13 6.397±0.68
ENSMUST00000188882 19.145±3.48 25.570±3.17 21.308±0.00 105.644±0.00 18.141±1.97 13.477±2.30 17.092±0.00 21.813±1.68 22.607±10.01 20.332±1.09 N/A 26.236±24.76 70.820±46.10 15.840±8.39

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003697 IEA single-stranded DNA binding
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0004519 IEA endonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0032403 IEA protein complex binding
GO:0043565 IEA sequence-specific DNA binding
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041830 tsn translin protein_coding Danio_rerio
ENSG00000211460 TSN translin protein_coding Homo_sapiens

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