C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: translin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000211460 TSN 9606 + 2:121737103-121767853 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389682 TSN-001 121755533-121767853 protein_coding
  ENST00000409193 TSN-007 121756171-121765661 protein_coding
  ENST00000455432 TSN-008 121737103-121765218 protein_coding
  ENST00000467324 TSN-002 121755659-121767294 retained_intron
  ENST00000478165 TSN-011 121755660-121765221 retained_intron
  ENST00000481818 TSN-006 121755703-121757409 retained_intron
  ENST00000483698 TSN-005 121755660-121757608 retained_intron
  ENST00000490104 TSN-003 121755663-121767179 retained_intron
  ENST00000490717 TSN-009 121755660-121763057 retained_intron
  ENST00000495112 TSN-010 121755685-121765284 processed_transcript
  ENST00000498545 TSN-004 121755660-121765985 processed_transcript
  ENST00000536142 TSN-201 121755545-121767853 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389682ENST00000409193ENST00000455432ENST00000467324ENST00000490717ENST00000498545ENST00000536142
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389682 6.337±0.00 5.181±0.00 0.753±0.00 7.351±0.03 4.883±0.00 2.282±0.95 2.803±0.79 6.738±3.38 4.024±1.33 1.410±0.77 1.485±0.33 13.881±4.37 4.252±0.69 13.536±0.14
ENST00000409193 N/A N/A 2.325±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455432 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.943±0.00 N/A N/A N/A N/A
ENST00000467324 7.957±0.00 7.555±0.00 N/A 11.173±0.00 6.155±4.61 5.229±2.30 3.230±2.58 8.836±0.00 4.631±0.00 3.508±1.22 1.821±1.32 8.968±1.55 4.969±0.24 20.462±0.00
ENST00000490717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.212±0.00 11.894±0.00 57.180±0.00
ENST00000498545 N/A N/A N/A 8.454±0.00 N/A N/A 2.764±0.00 N/A 5.589±0.00 4.403±0.00 4.228±0.00 N/A N/A N/A
ENST00000536142 N/A N/A N/A N/A 2.175±0.00 0.953±0.00 N/A 1.210±0.00 N/A 1.987±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0004519 IEA endonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006310 TAS DNA recombination
GO:0032403 IEA protein complex binding
GO:0043565 IEA sequence-specific DNA binding
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041830 tsn translin protein_coding Danio_rerio
ENSMUSG00000026374 Tsn translin protein_coding Mus_musculus

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