C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoblastoma binding protein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026439 Rbbp5 10090 + 1:132477365-132505659 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027700 Rbbp5-003 132477435-132505659 protein_coding
  ENSMUST00000187505 Rbbp5-005 132477406-132504108 protein_coding
  ENSMUST00000187834 Rbbp5-006 132503733-132505655 retained_intron
  ENSMUST00000188575 Rbbp5-004 132477491-132490501 protein_coding
  ENSMUST00000189786 Rbbp5-007 132477642-132490585 protein_coding
  ENSMUST00000190825 Rbbp5-001 132477365-132504490 protein_coding
  ENSMUST00000190997 Rbbp5-002 132477367-132504889 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027700ENSMUST00000187505ENSMUST00000187834ENSMUST00000190825ENSMUST00000190997
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027700 N/A N/A 2.495±0.23 3.567±0.81 N/A N/A N/A N/A 2.446±0.66 N/A 1.407±0.00 3.788±0.26 2.997±1.60 0.605±0.00
ENSMUST00000187505 N/A N/A N/A 10.324±0.00 N/A N/A N/A N/A N/A N/A N/A 10.451±0.00 10.790±5.07 4.502±0.00
ENSMUST00000187834 6.910±2.15 2.981±0.89 7.115±0.90 11.692±2.50 6.545±1.93 3.432±1.59 4.997±0.68 6.639±0.50 5.644±1.71 8.578±1.17 2.285±0.44 5.286±1.69 4.689±2.06 2.213±0.21
ENSMUST00000190825 N/A N/A 2.247±0.07 4.215±2.62 2.394±0.81 1.489±0.76 1.818±0.48 1.684±0.33 1.885±0.63 2.236±0.23 N/A 2.685±2.10 3.579±1.91 0.859±0.02
ENSMUST00000190997 3.191±1.22 1.834±0.74 2.665±0.21 2.635±0.21 2.262±0.75 1.829±0.98 1.925±0.87 1.755±0.61 2.925±1.34 2.151±0.28 2.803±0.53 3.159±1.68 4.423±1.85 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 ISO nucleus
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006974 ISO cellular response to DNA damage stimulus
GO:0035064 IEA methylated histone binding
GO:0035097 ISO histone methyltransferase complex
GO:0042800 IEA histone methyltransferase activity (H3-K4 specific)
GO:0043627 IEA response to estrogen
GO:0044212 IEA transcription regulatory region DNA binding
GO:0048188 ISS Set1C/COMPASS complex
GO:0051568 IMP histone H3-K4 methylation
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042147 rbbp5 retinoblastoma binding protein 5 protein_coding Danio_rerio
ENSG00000117222 RBBP5 retinoblastoma binding protein 5 protein_coding Homo_sapiens

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