C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: POU domain, class 2, transcription factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026565 Pou2f1 10090 - 1:165875423-166002678 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027850 Pou2f1-006 165875608-166002629 protein_coding
  ENSMUST00000069609 Pou2f1-005 165875682-165934900 protein_coding
  ENSMUST00000082225 Pou2f1-010 165880082-165934939 retained_intron
  ENSMUST00000111426 Pou2f1-009 165875461-165934948 protein_coding
  ENSMUST00000111429 Pou2f1-003 165875457-166002609 protein_coding
  ENSMUST00000159212 Pou2f1-012 165875423-165913283 protein_coding
  ENSMUST00000160260 Pou2f1-001 165875457-166002678 protein_coding
  ENSMUST00000160908 Pou2f1-002 165875457-166002622 protein_coding
  ENSMUST00000176004 Pou2f1-014 165875584-165892119 retained_intron
  ENSMUST00000176101 Pou2f1-007 165929657-166002629 retained_intron
  ENSMUST00000176800 Pou2f1-004 165931699-166002609 protein_coding
  ENSMUST00000176942 Pou2f1-008 165879927-165935011 retained_intron
  ENSMUST00000177358 Pou2f1-013 165911323-166002613 protein_coding
  ENSMUST00000177472 Pou2f1-015 165891032-166002615 retained_intron
  ENSMUST00000184643 Pou2f1-016 165875457-166002618 protein_coding
  ENSMUST00000184799 Pou2f1-011 165875488-165880160 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000069609ENSMUST00000082225ENSMUST00000111429ENSMUST00000159212ENSMUST00000160260ENSMUST00000160908ENSMUST00000176004ENSMUST00000177358ENSMUST00000184643
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000069609 N/A 3.741±0.10 1.485±0.18 N/A N/A 0.834±0.00 N/A 2.444±0.87 N/A
ENSMUST00000082225 2.550±0.79 N/A 2.092±0.00 N/A N/A N/A N/A 2.622±0.42 N/A
ENSMUST00000111429 1.215±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159212 N/A N/A 2.304±0.33 N/A N/A 1.156±0.40 N/A N/A N/A
ENSMUST00000160260 N/A N/A 1.486±0.00 N/A N/A N/A N/A N/A 2.796±0.57
ENSMUST00000160908 N/A N/A N/A N/A N/A N/A 2.359±0.00 N/A N/A
ENSMUST00000176004 2.328±0.15 N/A 2.922±0.23 N/A 2.025±0.00 1.460±0.29 N/A 4.159±0.87 N/A
ENSMUST00000177358 N/A N/A N/A N/A N/A N/A N/A 9.813±0.00 N/A
ENSMUST00000184643 1.470±0.00 N/A 1.235±0.00 0.839±0.00 0.991±0.00 N/A 2.268±0.00 2.602±0.75 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UH CIL_0008UH_0002 VISTA 1:165634234-166236307

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 ISO nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0030910 IGI olfactory placode formation
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 ISO negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060235 IGI lens induction in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007996 pou2f1b POU class 2 homeobox 1b protein_coding Danio_rerio
ENSG00000143190 POU2F1 POU class 2 homeobox 1 protein_coding Homo_sapiens

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