C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: POU class 2 homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143190 POU2F1 9606 + 1:167220829-167427345 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000271411 POU2F1-001 167220890-167427345 nonsense_mediated_decay
  ENST00000367862 POU2F1-003 167329044-167427345 protein_coding
  ENST00000367865 POU2F1-004 167220895-167427345 processed_transcript
  ENST00000367866 POU2F1-002 167220829-167427345 protein_coding
  ENST00000420254 POU2F1-014 167329166-167413114 protein_coding
  ENST00000429375 POU2F1-010 167220891-167427342 protein_coding
  ENST00000442313 POU2F1-007 167220891-167371979 nonsense_mediated_decay
  ENST00000443275 POU2F1-005 167371980-167427342 protein_coding
  ENST00000470928 POU2F1-008 167357460-167387255 processed_transcript
  ENST00000490100 POU2F1-009 167383474-167389617 retained_intron
  ENST00000492850 POU2F1-006 167220895-167383869 processed_transcript
  ENST00000541643 POU2F1-017 167220898-167427345 protein_coding
  ENST00000557909 POU2F1-016 167220886-167374183 processed_transcript
  ENST00000559038 POU2F1-012 167220876-167365569 processed_transcript
  ENST00000559648 POU2F1-015 167389677-167396825 processed_transcript
  ENST00000560232 POU2F1-011 167220891-167396318 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367862ENST00000367865ENST00000367866ENST00000429375ENST00000443275ENST00000541643
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367862 0.757±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000367865 N/A 0.407±0.00 N/A 0.453±0.13 N/A 0.464±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000367866 N/A N/A N/A 0.736±0.25 0.791±0.00 N/A 0.358±0.00 0.841±0.00 N/A 0.887±0.17 0.625±0.00 1.898±0.10 0.843±0.40 1.150±0.01
ENST00000429375 1.211±0.00 0.609±0.00 N/A N/A 0.645±0.06 1.314±0.00 N/A 0.469±0.00 0.358±0.00 N/A 0.398±0.00 1.781±0.00 0.333±0.03 0.522±0.00
ENST00000443275 N/A N/A 0.440±0.00 0.683±0.00 N/A N/A N/A N/A N/A N/A 0.265±0.00 0.737±0.49 0.272±0.00 0.611±0.00
ENST00000541643 N/A 0.290±0.00 N/A N/A N/A N/A 0.284±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UH CIL_0008UH_0001 VISTA 1:167027717-167629809
CIL_00027W CIL_00027W_0002 CGP 1:167220829-167518610

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0010467 TAS gene expression
GO:0030910 IEA olfactory placode formation
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060235 IEA lens induction in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007996 pou2f1b POU class 2 homeobox 1b protein_coding Danio_rerio
ENSMUSG00000026565 Pou2f1 POU domain, class 2, transcription factor 1 protein_coding Mus_musculus

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