C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: T-box 19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026572 Tbx19 10090 - 1:165137855-165160773 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027859 Tbx19-001 165137855-165160773 protein_coding
  ENSMUST00000160350 Tbx19-003 165142439-165149379 processed_transcript
  ENSMUST00000161144 Tbx19-004 165138947-165153726 protein_coding
  ENSMUST00000161777 Tbx19-002 165138889-165149694 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000027859ENSMUST00000160350ENSMUST00000161144ENSMUST00000161777
Transcript ID Adipose Bladder Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027859 0.020±0.01 0.003±0.00 0.037±0.03 N/A 0.008±0.01 0.053±0.04 0.034±0.01 0.180±0.12 N/A N/A
ENSMUST00000160350 N/A N/A N/A N/A 0.038±0.00 0.198±0.12 N/A 0.431±0.25 N/A N/A
ENSMUST00000161144 N/A N/A N/A N/A 0.070±0.05 N/A N/A 0.237±0.14 N/A N/A
ENSMUST00000161777 N/A N/A N/A 0.023±0.00 0.086±0.04 N/A N/A 0.389±0.20 0.005±0.00 2.296±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005CV CIL_0005CV_0002 CGP 1:165137855-165194433

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001158 IDA enhancer sequence-specific DNA binding
GO:0003677 IMP DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0021983 IMP pituitary gland development
GO:0042127 IMP regulation of cell proliferation
GO:0045165 IMP cell fate commitment
GO:0045595 IMP regulation of cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079187 tbx19 T-box 19 protein_coding Danio_rerio
ENSG00000143178 TBX19 T-box 19 protein_coding Homo_sapiens

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