C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T-box 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027859 Tbx19-001 ENSMUSG00000026572 10090 - 1:165137855-165160773 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverLungMuscleOvaryENSMUST00000027859
Transcript ID Adipose Bladder Brain Liver Lung Muscle Ovary
ENSMUST00000027859 0.020±0.01 0.003±0.00 0.037±0.03 0.008±0.01 0.053±0.04 0.034±0.01 0.180±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005CV CIL_0005CV_0002 CGP 1:165137855-165194433

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001158 IDA enhancer sequence-specific DNA binding
GO:0003677 IMP DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0021983 IMP pituitary gland development
GO:0042127 IMP regulation of cell proliferation
GO:0045165 IMP cell fate commitment
GO:0045595 IMP regulation of cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000367821 TBX19-001 protein_coding Homo_sapiens 0 1736
ENST00000431969 TBX19-004 protein_coding Homo_sapiens 0 712
ENST00000441464 TBX19-003 protein_coding Homo_sapiens 0 926
ENST00000465440 TBX19-002 processed_transcript Homo_sapiens 0 525

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