C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor IIIC, polypeptide 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026816 Gtf3c5 10090 - 2:28566311-28583751 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028157 Gtf3c5-002 28566311-28583279 protein_coding
  ENSMUST00000113889 Gtf3c5-001 28566311-28583189 protein_coding
  ENSMUST00000139553 Gtf3c5-005 28579615-28582988 nonsense_mediated_decay
  ENSMUST00000139580 Gtf3c5-004 28568755-28571216 retained_intron
  ENSMUST00000142054 Gtf3c5-006 28572275-28573950 retained_intron
  ENSMUST00000150699 Gtf3c5-003 28583005-28583751 processed_transcript
  ENSMUST00000150929 Gtf3c5-007 28579082-28583267 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028157ENSMUST00000113889ENSMUST00000150929
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028157 6.335±2.96 1.723±0.00 6.938±1.24 11.819±4.10 5.653±2.71 2.534±0.28 4.703±1.77 4.888±2.47 4.673±3.45 5.576±2.53 2.421±0.75 5.638±2.64 7.906±2.04 4.321±1.22
ENSMUST00000113889 4.765±3.80 10.795±0.76 1.162±0.00 2.587±0.62 5.580±2.26 10.508±1.74 2.945±1.05 5.063±2.20 2.133±0.95 5.365±3.66 1.649±0.00 10.676±4.96 2.597±1.77 4.120±0.00
ENSMUST00000150929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.282±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000127 IEA transcription factor TFIIIC complex
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0035914 IMP skeletal muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067979 gtf3c5 general transcription factor IIIC, polypeptide 5 protein_coding Danio_rerio
ENSG00000148308 GTF3C5 general transcription factor IIIC, polypeptide 5, 63kDa protein_coding Homo_sapiens

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