C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family A (ABC1), member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026944 Abca2 10090 + 2:25428703-25448540 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102919 Abca2-001 25428703-25448540 protein_coding
  ENSMUST00000125520 Abca2-007 25445162-25446865 processed_transcript
  ENSMUST00000141065 Abca2-006 25445843-25446476 processed_transcript
  ENSMUST00000143075 Abca2-003 25442948-25443813 processed_transcript
  ENSMUST00000144560 Abca2-005 25445822-25446542 processed_transcript
  ENSMUST00000149385 Abca2-004 25445665-25447067 processed_transcript
  ENSMUST00000150550 Abca2-002 25441308-25442917 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102919ENSMUST00000125520
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102919 9.805±1.80 15.058±1.31 3.126±0.99 21.000±16.98 13.090±5.80 3.089±0.73 6.766±0.89 13.278±1.83 5.884±4.79 12.585±0.95 3.695±0.64 8.062±2.49 0.634±0.25 3.057±1.43
ENSMUST00000125520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.256±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0006200 IEA ATP catabolic process
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0016020 IEA membrane
GO:0032383 IEA regulation of intracellular cholesterol transport
GO:0042632 IEA cholesterol homeostasis
GO:0048545 IEA response to steroid hormone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013500 abca2 ATP-binding cassette, sub-family A (ABC1), member 2 protein_coding Danio_rerio
ENSG00000107331 ABCA2 ATP-binding cassette, sub-family A (ABC1), member 2 protein_coding Homo_sapiens

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