C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102919 Abca2-001 ENSMUSG00000026944 10090 + 2:25428703-25448540 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102919
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102919 9.805±1.80 15.058±1.31 3.126±0.99 21.000±16.98 13.090±5.80 3.089±0.73 6.766±0.89 13.278±1.83 5.884±4.79 12.585±0.95 3.695±0.64 8.062±2.49 0.634±0.25 3.057±1.43

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0006200 IEA ATP catabolic process
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0016020 IEA membrane
GO:0032383 IEA regulation of intracellular cholesterol transport
GO:0042632 IEA cholesterol homeostasis
GO:0048545 IEA response to steroid hormone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000090743 abca2-201 protein_coding Danio_rerio 0 1683
ENSDART00000141554 abca2-001 protein_coding Danio_rerio 0 1672
ENST00000265662 ABCA2-201 protein_coding Homo_sapiens 0 8161
ENST00000341511 ABCA2-002 protein_coding Homo_sapiens 0 8137
ENST00000371605 ABCA2-202 protein_coding Homo_sapiens 0 8176
ENST00000431584 ABCA2-021 retained_intron Homo_sapiens 0 1011
ENST00000437791 ABCA2-006 processed_transcript Homo_sapiens 0 538
ENST00000459850 ABCA2-013 retained_intron Homo_sapiens 0 6349
ENST00000463603 ABCA2-008 retained_intron Homo_sapiens 0 590
ENST00000464876 ABCA2-001 retained_intron Homo_sapiens 0 582
ENST00000466707 ABCA2-010 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000470535 ABCA2-019 nonsense_mediated_decay Homo_sapiens 0 512
ENST00000479446 ABCA2-009 nonsense_mediated_decay Homo_sapiens 0 5049
ENST00000487109 ABCA2-016 nonsense_mediated_decay Homo_sapiens 0 3240
ENST00000488535 ABCA2-014 nonsense_mediated_decay Homo_sapiens 0 3668
ENST00000492260 ABCA2-003 retained_intron Homo_sapiens 0 1400
ENST00000494046 ABCA2-017 retained_intron Homo_sapiens 0 1260
ENST00000614293 ABCA2-203 protein_coding Homo_sapiens 0 7958

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