C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ceramide synthase 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027035 Cers6 10090 + 2:68861441-69114282 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028426 Cers6-001 68861441-69114282 protein_coding
  ENSMUST00000141498 Cers6-003 68959911-69051328 retained_intron
  ENSMUST00000141983 Cers6-002 68861470-68934851 retained_intron
  ENSMUST00000155748 Cers6-004 68947260-69050972 retained_intron
  ENSMUST00000175684 Cers6-005 68861450-69071541 retained_intron
  ENSMUST00000176018 Cers6-006 68861586-69108644 protein_coding
  ENSMUST00000183755 Cers6-007 68861442-68862724 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028426ENSMUST00000141983ENSMUST00000175684ENSMUST00000176018ENSMUST00000183755
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028426 3.247±0.34 0.947±0.22 7.250±0.41 9.974±1.72 1.742±0.46 12.146±3.35 0.521±0.15 6.560±0.57 2.533±0.89 5.678±0.72 0.094±0.02 5.937±3.71 4.617±1.23 0.948±0.42
ENSMUST00000141983 N/A 1.423±0.32 N/A N/A 3.789±0.41 16.240±2.91 N/A N/A 3.072±0.00 N/A N/A 10.982±2.54 N/A N/A
ENSMUST00000175684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.199±0.00
ENSMUST00000176018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.098±0.00
ENSMUST00000183755 N/A 0.158±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063C CIL_00063C_0002 CGP 2:68861441-69189330

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030148 IDA sphingolipid biosynthetic process
GO:0046513 IDA ceramide biosynthetic process
GO:0050291 IDA sphingosine N-acyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053583 cers6 ceramide synthase 6 protein_coding Danio_rerio
ENSG00000172292 CERS6 ceramide synthase 6 protein_coding Homo_sapiens

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