C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cell cycle associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027184 Caprin1 10090 - 2:103762941-103797649 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028607 Caprin1-001 103762941-103797649 protein_coding
  ENSMUST00000111147 Caprin1-002 103765018-103797104 protein_coding
  ENSMUST00000128477 Caprin1-011 103773471-103775654 processed_transcript
  ENSMUST00000132537 Caprin1-013 103771711-103774272 retained_intron
  ENSMUST00000137390 Caprin1-012 103773001-103776008 retained_intron
  ENSMUST00000137572 Caprin1-010 103772749-103773712 processed_transcript
  ENSMUST00000141750 Caprin1-007 103777963-103796933 processed_transcript
  ENSMUST00000143188 Caprin1-008 103772998-103779368 protein_coding
  ENSMUST00000143349 Caprin1-016 103767107-103772781 protein_coding
  ENSMUST00000145606 Caprin1-015 103767812-103771793 protein_coding
  ENSMUST00000145697 Caprin1-004 103779524-103796544 processed_transcript
  ENSMUST00000145770 Caprin1-005 103782521-103796973 retained_intron
  ENSMUST00000146527 Caprin1-003 103796452-103797599 retained_intron
  ENSMUST00000149175 Caprin1-014 103768450-103772684 retained_intron
  ENSMUST00000155733 Caprin1-006 103782919-103796868 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028607ENSMUST00000111147ENSMUST00000141750ENSMUST00000143188ENSMUST00000143349ENSMUST00000146527ENSMUST00000149175
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028607 N/A 28.390±12.57 N/A 13.293±1.70 10.548±1.61 13.950±3.94 N/A 7.148±2.20 10.972±3.10 11.561±0.00 0.994±0.13 28.611±11.70 N/A N/A
ENSMUST00000111147 20.270±7.83 34.086±10.02 40.954±0.15 49.769±25.93 33.914±13.30 15.795±5.84 18.042±3.62 17.661±12.58 39.148±17.13 19.043±13.80 5.937±2.01 45.137±27.84 71.172±32.33 44.245±25.39
ENSMUST00000141750 N/A N/A N/A 29.370±0.00 N/A N/A N/A N/A N/A N/A N/A 97.404±0.00 102.619±0.00 124.119±0.00
ENSMUST00000143188 N/A N/A N/A 95.534±0.00 N/A N/A N/A N/A N/A N/A N/A 280.767±0.00 169.175±76.51 248.416±0.00
ENSMUST00000143349 N/A N/A N/A 22.189±14.66 N/A N/A 8.282±0.00 N/A N/A N/A 4.012±0.58 N/A N/A N/A
ENSMUST00000146527 N/A 66.673±23.86 N/A N/A 31.701±3.03 N/A N/A N/A N/A N/A N/A 64.038±22.05 N/A N/A
ENSMUST00000149175 N/A N/A N/A N/A N/A N/A N/A N/A 40.168±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000929 CIL_000929_0002 VISTA 2:103593010-104195664

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0003723 ISS RNA binding
GO:0005737 IEA cytoplasm
GO:0010494 ISS cytoplasmic stress granule
GO:0016020 IEA membrane
GO:0017148 ISS negative regulation of translation
GO:0042995 IEA cell projection
GO:0044822 IEA poly(A) RNA binding
GO:0050775 IMP positive regulation of dendrite morphogenesis
GO:0061003 IMP positive regulation of dendritic spine morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009346 caprin1a cell cycle associated protein 1a protein_coding Danio_rerio
ENSG00000135387 CAPRIN1 cell cycle associated protein 1 protein_coding Homo_sapiens

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