C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell cycle associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028607 Caprin1-001 ENSMUSG00000027184 10090 - 2:103762941-103797649 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMuscleOvaryENSMUST00000028607
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary
ENSMUST00000028607 28.390±12.57 13.293±1.70 10.548±1.61 13.950±3.94 7.148±2.20 10.972±3.10 11.561±0.00 0.994±0.13 28.611±11.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000929 CIL_000929_0002 VISTA 2:103593010-104195664

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0003723 ISS RNA binding
GO:0005737 IEA cytoplasm
GO:0010494 ISS cytoplasmic stress granule
GO:0016020 IEA membrane
GO:0017148 ISS negative regulation of translation
GO:0042995 IEA cell projection
GO:0044822 IEA poly(A) RNA binding
GO:0050775 IMP positive regulation of dendrite morphogenesis
GO:0061003 IMP positive regulation of dendritic spine morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000098889 caprin1b-001 protein_coding Danio_rerio 2e-26 126
ENST00000341394 CAPRIN1-001 protein_coding Homo_sapiens 0 4728
ENST00000389645 CAPRIN1-016 protein_coding Homo_sapiens 0 2939
ENST00000526477 CAPRIN1-006 processed_transcript Homo_sapiens 0 420
ENST00000526494 CAPRIN1-008 processed_transcript Homo_sapiens 0 477
ENST00000528856 CAPRIN1-019 processed_transcript Homo_sapiens 0 418
ENST00000529307 CAPRIN1-002 protein_coding Homo_sapiens 0 2900
ENST00000530008 CAPRIN1-005 processed_transcript Homo_sapiens 0 586
ENST00000530820 CAPRIN1-017 protein_coding Homo_sapiens 0 2817
ENST00000531668 CAPRIN1-012 processed_transcript Homo_sapiens 0 658
ENST00000532755 CAPRIN1-003 processed_transcript Homo_sapiens 1e-39 167
ENST00000532820 CAPRIN1-009 protein_coding Homo_sapiens 0 4109
ENST00000533562 CAPRIN1-013 processed_transcript Homo_sapiens 0 372
ENST00000533641 CAPRIN1-004 processed_transcript Homo_sapiens 0 420
ENST00000533657 CAPRIN1-015 processed_transcript Homo_sapiens 0 2808
ENST00000534042 CAPRIN1-010 processed_transcript Homo_sapiens 0 616
ENST00000534825 CAPRIN1-007 protein_coding Homo_sapiens 0 793
ENST00000618582 CAPRIN1-201 protein_coding Homo_sapiens 0 4104

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