C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cell cycle associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135387 CAPRIN1 9606 + 11:34051683-34101156 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341394 CAPRIN1-001 34051683-34101156 protein_coding
  ENST00000389645 CAPRIN1-016 34051732-34099054 protein_coding
  ENST00000526477 CAPRIN1-006 34051732-34052867 processed_transcript
  ENST00000526494 CAPRIN1-008 34053451-34076415 processed_transcript
  ENST00000528856 CAPRIN1-019 34051732-34099332 processed_transcript
  ENST00000528948 CAPRIN1-011 34091619-34096625 processed_transcript
  ENST00000529307 CAPRIN1-002 34052981-34099514 protein_coding
  ENST00000530008 CAPRIN1-005 34055738-34076596 processed_transcript
  ENST00000530820 CAPRIN1-017 34052329-34099058 protein_coding
  ENST00000531668 CAPRIN1-012 34095819-34099388 processed_transcript
  ENST00000532755 CAPRIN1-003 34053522-34071940 processed_transcript
  ENST00000532820 CAPRIN1-009 34052210-34100464 protein_coding
  ENST00000533562 CAPRIN1-013 34096160-34097272 processed_transcript
  ENST00000533641 CAPRIN1-004 34055686-34076373 processed_transcript
  ENST00000533657 CAPRIN1-015 34090026-34101151 processed_transcript
  ENST00000534042 CAPRIN1-010 34051751-34076623 processed_transcript
  ENST00000534825 CAPRIN1-007 34052055-34076429 protein_coding
  ENST00000618582 CAPRIN1-201 34052381-34100464 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341394ENST00000389645ENST00000529307ENST00000530820ENST00000532820ENST00000533657ENST00000618582
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341394 24.050±0.00 22.551±0.00 N/A 9.665±4.76 20.859±4.83 15.763±4.44 8.320±5.76 17.544±11.09 7.946±0.26 17.118±9.06 9.686±0.00 26.699±13.89 20.616±3.80 33.961±7.24
ENST00000389645 N/A N/A 1.851±0.00 5.526±0.87 N/A N/A 3.153±1.47 N/A N/A N/A N/A N/A N/A N/A
ENST00000529307 N/A N/A N/A N/A N/A N/A N/A 4.949±0.00 N/A N/A N/A N/A 29.324±0.00 114.732±0.00
ENST00000530820 N/A N/A N/A 6.127±0.00 N/A N/A N/A N/A N/A 5.382±0.00 N/A N/A N/A N/A
ENST00000532820 N/A N/A 3.328±0.00 N/A N/A N/A N/A N/A 5.139±0.00 N/A N/A 7.909±0.00 6.637±0.00 23.387±0.00
ENST00000533657 N/A N/A 3.506±0.00 4.457±0.00 N/A N/A N/A N/A N/A 6.684±0.00 N/A 13.473±0.00 N/A N/A
ENST00000618582 13.083±0.00 N/A 4.623±0.00 5.097±0.00 11.679±0.00 9.941±0.75 3.203±0.28 2.543±0.00 4.000±0.00 4.351±0.00 6.316±1.08 13.808±0.00 N/A 14.892±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000929 CIL_000929_0001 VISTA 11:33642739-34246310

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0003723 ISS RNA binding
GO:0005737 IDA cytoplasm
GO:0005887 TAS integral component of plasma membrane
GO:0010494 ISS cytoplasmic stress granule
GO:0016020 IDA membrane
GO:0017148 ISS negative regulation of translation
GO:0042995 IEA cell projection
GO:0044822 IDA poly(A) RNA binding
GO:0050775 ISS positive regulation of dendrite morphogenesis
GO:0061003 ISS positive regulation of dendritic spine morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009346 caprin1a cell cycle associated protein 1a protein_coding Danio_rerio
ENSMUSG00000027184 Caprin1 cell cycle associated protein 1 protein_coding Mus_musculus

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