C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein kinase C and casein kinase substrate in neurons 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027257 Pacsin3 10090 + 2:91255954-91264679 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028694 Pacsin3-004 91256813-91264678 protein_coding
  ENSMUST00000059566 Pacsin3-002 91256162-91264679 protein_coding
  ENSMUST00000111349 Pacsin3-001 91257329-91264679 protein_coding
  ENSMUST00000124658 Pacsin3-007 91259206-91260229 processed_transcript
  ENSMUST00000126754 Pacsin3-010 91260805-91261669 retained_intron
  ENSMUST00000128684 Pacsin3-012 91263106-91264359 protein_coding
  ENSMUST00000131711 Pacsin3-006 91257335-91261301 protein_coding
  ENSMUST00000134699 Pacsin3-008 91255954-91261569 protein_coding
  ENSMUST00000138470 Pacsin3-014 91259829-91261598 protein_coding
  ENSMUST00000141313 Pacsin3-011 91262913-91263533 retained_intron
  ENSMUST00000143883 Pacsin3-009 91256115-91257128 retained_intron
  ENSMUST00000144394 Pacsin3-003 91256813-91261246 protein_coding
  ENSMUST00000154959 Pacsin3-013 91256144-91260541 protein_coding
  ENSMUST00000156919 Pacsin3-005 91256838-91261335 protein_coding
  ENSMUST00000168916 Pacsin3-201 91256813-91264679 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028694ENSMUST00000059566ENSMUST00000111349ENSMUST00000128684ENSMUST00000131711ENSMUST00000143883ENSMUST00000156919ENSMUST00000168916
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028694 7.647±0.67 17.666±1.03 11.273±0.36 6.428±3.65 10.596±5.02 3.809±0.85 31.232±5.29 7.602±1.11 10.066±3.25 11.163±3.64 91.343±14.15 14.367±3.51 9.071±4.18 1.055±0.13
ENSMUST00000059566 N/A N/A N/A 7.033±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000111349 2.132±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.795±0.11
ENSMUST00000128684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.762±0.38
ENSMUST00000131711 N/A 20.953±0.00 N/A N/A N/A N/A N/A N/A 17.331±1.09 N/A N/A N/A N/A N/A
ENSMUST00000143883 N/A N/A N/A N/A 6.247±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.281±0.00 N/A N/A
ENSMUST00000168916 3.573±0.70 8.129±1.06 4.826±1.71 1.413±0.26 6.212±3.96 2.115±0.60 18.021±0.40 4.129±1.04 4.275±1.23 2.967±0.46 33.793±4.34 5.519±1.62 3.648±2.87 1.170±0.24

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006897 IEA endocytosis
GO:0008092 IDA cytoskeletal protein binding
GO:0008289 IDA lipid binding
GO:0019855 IMP calcium channel inhibitor activity
GO:0045806 IDA negative regulation of endocytosis
GO:0051044 IEA positive regulation of membrane protein ectodomain proteolysis
GO:0051926 IMP negative regulation of calcium ion transport
GO:0070062 IEA extracellular vesicular exosome
GO:0097320 IEA:IDA membrane tubulation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024587 pacsin3 protein kinase C and casein kinase substrate in neurons 3 protein_coding Danio_rerio
ENSG00000165912 PACSIN3 protein kinase C and casein kinase substrate in neurons 3 protein_coding Homo_sapiens

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