C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 4930402H24 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027309 4930402H24Rik 10090 - 2:130706200-130906406 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044766 4930402H24Rik-001 130706200-130840134 protein_coding
  ENSMUST00000110243 4930402H24Rik-005 130805676-130840145 protein_coding
  ENSMUST00000119422 4930402H24Rik-008 130709130-130839687 protein_coding
  ENSMUST00000120316 4930402H24Rik-017 130810862-130840137 protein_coding
  ENSMUST00000123049 4930402H24Rik-013 130777454-130810894 processed_transcript
  ENSMUST00000133132 4930402H24Rik-012 130739000-130757451 processed_transcript
  ENSMUST00000138758 4930402H24Rik-003 130712304-130730909 protein_coding
  ENSMUST00000138990 4930402H24Rik-015 130810897-130840134 protein_coding
  ENSMUST00000139684 4930402H24Rik-004 130710836-130719929 nonsense_mediated_decay
  ENSMUST00000142128 4930402H24Rik-009 130803746-130814292 processed_transcript
  ENSMUST00000144014 4930402H24Rik-007 130783433-130840111 retained_intron
  ENSMUST00000144717 4930402H24Rik-014 130777257-130778333 processed_transcript
  ENSMUST00000145851 4930402H24Rik-010 130739011-130770773 protein_coding
  ENSMUST00000146975 4930402H24Rik-016 130812866-130906406 protein_coding
  ENSMUST00000148924 4930402H24Rik-006 130748451-130840132 retained_intron
  ENSMUST00000148932 4930402H24Rik-002 130719839-130731176 processed_transcript
  ENSMUST00000151673 4930402H24Rik-011 130736521-130739500 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044766ENSMUST00000119422ENSMUST00000120316
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044766 16.068±4.70 9.508±1.11 20.399±1.94 23.340±10.21 11.134±3.63 5.292±0.37 5.664±1.02 9.553±3.33 3.797±1.06 8.889±2.72 0.439±0.14 10.187±2.43 6.693±1.63 6.311±1.96
ENSMUST00000119422 N/A N/A N/A N/A 8.776±0.00 N/A N/A N/A N/A N/A 0.389±0.00 N/A N/A 8.873±0.84
ENSMUST00000120316 N/A N/A N/A 128.238±0.00 N/A N/A N/A N/A N/A N/A N/A 102.494±0.00 92.065±35.41 206.880±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000340 CIL_000340_0002 CGP 2:130684113-130906406
CIL_00032V CIL_00032V_0002 CGP 2:130706200-131030333

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079056 C13H20orf194 chromosome 20 open reading frame 194 protein_coding Danio_rerio
ENSG00000088854 C20orf194 chromosome 20 open reading frame 194 protein_coding Homo_sapiens

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