C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000340_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000088836-ENSG00000088854 CGP 9606 20:3227417-3407625
GeneTranscriptPositionBiotype
ENSG00000088836 (SLC4A11)
solute carrier family 4, sodium borate transporter, member 11 		ENST00000380056 (SLC4A11-002) 3227417-3237727 protein_coding
ENST00000380059 (SLC4A11-001) 3227417-3238166 protein_coding
ENST00000437836 (SLC4A11-007) 3234235-3238713 protein_coding
ENST00000470631 (SLC4A11-004) 3229671-3230560 processed_transcript
ENST00000474451 (SLC4A11-006) 3227498-3239190 nonsense_mediated_decay
ENST00000488544 (SLC4A11-005) 3228928-3229776 processed_transcript
ENST00000539553 (SLC4A11-003) 3227636-3239190 protein_coding
ENSG00000088854 (C20orf194)
chromosome 20 open reading frame 194 		ENST00000252032 (C20orf194-001) 3249305-3407625 protein_coding
ENST00000619760 (C20orf194-002) 3295494-3316090 processed_transcript
ENSG00000201294 (RNU6-1019P)
RNA, U6 small nuclear 1019, pseudogene 		ENST00000364424 (RNU6-1019P-201) 3360036-3360142 snRNA
ENSG00000226632 (UBE2V1P1)
ubiquitin-conjugating enzyme E2 variant 1 pseudogene 1 		ENST00000430836 (UBE2V1P1-001) 3361880-3362324 processed_pseudogene
ENSG00000277287 (RP4-794I6.4)
 ENST00000621919 (RP4-794I6.4-001) 3239705-3245382 lincRNA
CIL_000340_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000074796-ENSMUSG00000027309 CGP 10090 2:130684113-130906406
GeneTranscriptPositionBiotype
ENSMUSG00000027309 (4930402H24Rik)
RIKEN cDNA 4930402H24 gene 		ENSMUST00000044766 (4930402H24Rik-001) 130706200-130840134 protein_coding
ENSMUST00000110243 (4930402H24Rik-005) 130805676-130840145 protein_coding
ENSMUST00000119422 (4930402H24Rik-008) 130709130-130839687 protein_coding
ENSMUST00000120316 (4930402H24Rik-017) 130810862-130840137 protein_coding
ENSMUST00000123049 (4930402H24Rik-013) 130777454-130810894 processed_transcript
ENSMUST00000133132 (4930402H24Rik-012) 130739000-130757451 processed_transcript
ENSMUST00000138758 (4930402H24Rik-003) 130712304-130730909 protein_coding
ENSMUST00000138990 (4930402H24Rik-015) 130810897-130840134 protein_coding
ENSMUST00000139684 (4930402H24Rik-004) 130710836-130719929 nonsense_mediated_decay
ENSMUST00000142128 (4930402H24Rik-009) 130803746-130814292 processed_transcript
ENSMUST00000144014 (4930402H24Rik-007) 130783433-130840111 retained_intron
ENSMUST00000144717 (4930402H24Rik-014) 130777257-130778333 processed_transcript
ENSMUST00000145851 (4930402H24Rik-010) 130739011-130770773 protein_coding
ENSMUST00000146975 (4930402H24Rik-016) 130812866-130906406 protein_coding
ENSMUST00000148924 (4930402H24Rik-006) 130748451-130840132 retained_intron
ENSMUST00000148932 (4930402H24Rik-002) 130719839-130731176 processed_transcript
ENSMUST00000151673 (4930402H24Rik-011) 130736521-130739500 retained_intron
ENSMUSG00000074796 (Slc4a11)
solute carrier family 4, sodium bicarbonate transporter-like, member 11 		ENSMUST00000099362 (Slc4a11-001) 130684113-130697519 protein_coding
ENSMUST00000127397 (Slc4a11-005) 130691549-130697469 protein_coding
ENSMUST00000134647 (Slc4a11-002) 130686577-130697469 retained_intron
ENSMUST00000138028 (Slc4a11-004) 130690833-130691982 retained_intron
ENSMUST00000144945 (Slc4a11-003) 130684113-130688565 retained_intron
ENSMUSG00000084694 (Gm24893)
predicted gene, 24893 		ENSMUST00000122745 (Gm24893-201) 130705328-130705696 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000340_0001ENSG00000088836ENST00000380056ENST00000380059ENST00000437836ENST00000470631ENST00000474451ENST00000488544ENST00000539553ENSG00000088854ENST00000252032ENST00000619760ENSG00000201294ENST00000364424ENSG00000226632ENST00000430836ENSG00000277287ENST00000621919CIL_000340_0002ENSMUSG00000027309ENSMUST00000044766ENSMUST00000110243ENSMUST00000119422ENSMUST00000120316ENSMUST00000123049ENSMUST00000133132ENSMUST00000138758ENSMUST00000138990ENSMUST00000139684ENSMUST00000142128ENSMUST00000144014ENSMUST00000144717ENSMUST00000145851ENSMUST00000146975ENSMUST00000148924ENSMUST00000148932ENSMUST00000151673ENSMUSG00000074796ENSMUST00000099362ENSMUST00000127397ENSMUST00000134647ENSMUST00000138028ENSMUST00000144945ENSMUSG00000084694ENSMUST00000122745
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000340_0001ENSG00000088836ENST00000380056ENST00000380059ENST00000474451ENST00000539553ENSG00000088854ENST00000252032ENSG00000201294ENST00000364424ENSG00000226632ENST00000430836ENSG00000277287ENST00000621919CIL_000340_0002ENSMUSG00000027309ENSMUST00000044766ENSMUST00000119422ENSMUST00000120316ENSMUSG00000074796ENSMUST00000099362ENSMUST00000134647ENSMUST00000138028ENSMUST00000144945ENSMUSG00000084694ENSMUST00000122745
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088836 ENST00000380056 N/A N/A N/A N/A N/A N/A N/A 0.763±0.00 N/A 0.472±0.00 N/A 0.981±0.31 0.122±0.00 0.536±0.00
ENST00000380059 N/A N/A N/A 0.331±0.17 N/A N/A N/A 1.276±0.00 N/A N/A N/A N/A N/A 0.952±0.14
ENST00000437836 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474451 N/A N/A N/A N/A N/A N/A 0.124±0.00 2.563±0.00 0.014±0.00 1.297±0.00 0.737±0.00 N/A 0.015±0.00 N/A
ENST00000488544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539553 N/A N/A N/A 0.463±0.00 N/A 0.040±0.00 N/A 2.404±0.00 0.013±0.00 0.228±0.00 0.982±0.00 0.548±0.30 0.125±0.04 1.230±0.34
ENSG00000088854 ENST00000252032 4.477±0.00 1.796±0.00 1.747±0.00 7.420±0.78 2.985±0.00 2.769±0.56 5.390±0.00 1.857±1.36 3.076±2.55 2.244±0.61 1.302±0.00 3.075±1.32 2.995±1.13 7.123±2.84
ENST00000619760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201294 ENST00000364424 N/A N/A N/A N/A N/A N/A 0.557±0.00 N/A N/A N/A N/A N/A N/A 0.178±0.00
ENSG00000226632 ENST00000430836 0.104±0.00 0.129±0.00 0.821±0.00 0.513±0.28 0.567±0.34 N/A 0.038±0.01 N/A 1.591±0.00 0.915±0.80 0.591±0.00 0.319±0.09 0.202±0.00 0.299±0.28
ENSG00000277287 ENST00000621919 0.254±0.00 0.456±0.00 0.101±0.00 0.164±0.00 0.190±0.11 0.071±0.05 0.120±0.00 0.501±0.00 0.058±0.00 0.219±0.17 0.163±0.00 0.158±0.10 0.033±0.01 0.244±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027309 ENSMUST00000044766 16.068±4.70 9.508±1.11 20.399±1.94 23.340±10.21 11.134±3.63 5.292±0.37 5.664±1.02 9.553±3.33 3.797±1.06 8.889±2.72 0.439±0.14 10.187±2.43 6.693±1.63 6.311±1.96
ENSMUST00000110243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000119422 N/A N/A N/A N/A 8.776±0.00 N/A N/A N/A N/A N/A 0.389±0.00 N/A N/A 8.873±0.84
ENSMUST00000120316 N/A N/A N/A 128.238±0.00 N/A N/A N/A N/A N/A N/A N/A 102.494±0.00 92.065±35.41 206.880±0.00
ENSMUST00000123049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000074796 ENSMUST00000099362 1.751±0.85 1.762±0.39 0.211±0.02 0.413±0.04 1.090±0.47 0.379±0.20 0.065±0.02 11.923±1.15 0.109±0.05 0.320±0.11 0.049±0.00 3.202±1.09 1.707±1.22 0.326±0.17
ENSMUST00000127397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134647 N/A N/A N/A 0.072±0.00 0.230±0.00 0.098±0.01 N/A N/A 0.034±0.00 0.115±0.00 0.026±0.01 0.740±0.41 N/A 0.025±0.00
ENSMUST00000138028 N/A N/A N/A 1.087±0.00 N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A
ENSMUST00000144945 0.594±0.00 N/A 0.071±0.02 0.279±0.00 0.356±0.14 0.096±0.01 0.078±0.00 2.236±0.00 0.035±0.00 0.138±0.00 0.045±0.02 0.588±0.00 0.456±0.37 N/A
ENSMUSG00000084694 ENSMUST00000122745 N/A N/A 0.189±0.00 0.272±0.20 0.776±0.40 0.262±0.00 0.136±0.00 0.234±0.09 0.079±0.06 0.209±0.00 N/A 0.549±0.18 0.076±0.03 0.158±0.00

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