C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00032V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000088854-ENSG00000088812 CGP 9606 20:3249305-3651122
GeneTranscriptPositionBiotype
ENSG00000088812 (ATRN)
attractin 		ENST00000262919 (ATRN-002) 3471040-3651122 protein_coding
ENST00000446916 (ATRN-001) 3471108-3615947 protein_coding
ENSG00000088854 (C20orf194)
chromosome 20 open reading frame 194 		ENST00000252032 (C20orf194-001) 3249305-3407625 protein_coding
ENST00000619760 (C20orf194-002) 3295494-3316090 processed_transcript
ENSG00000201294 (RNU6-1019P)
RNA, U6 small nuclear 1019, pseudogene 		ENST00000364424 (RNU6-1019P-201) 3360036-3360142 snRNA
ENSG00000226632 (UBE2V1P1)
ubiquitin-conjugating enzyme E2 variant 1 pseudogene 1 		ENST00000430836 (UBE2V1P1-001) 3361880-3362324 processed_pseudogene
ENSG00000230568 (SF3A3P1)
splicing factor 3a, subunit 3 pseudogene 1 		ENST00000446317 (SF3A3P1-001) 3489529-3491005 processed_pseudogene
ENSG00000264957 (AL109805.1)
 ENST00000579046 (AL109805.1-201) 3507007-3507112 miRNA
CIL_00032V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027309-ENSMUSG00000027312 CGP 10090 2:130706200-131030333
GeneTranscriptPositionBiotype
ENSMUSG00000027309 (4930402H24Rik)
RIKEN cDNA 4930402H24 gene 		ENSMUST00000044766 (4930402H24Rik-001) 130706200-130840134 protein_coding
ENSMUST00000110243 (4930402H24Rik-005) 130805676-130840145 protein_coding
ENSMUST00000119422 (4930402H24Rik-008) 130709130-130839687 protein_coding
ENSMUST00000120316 (4930402H24Rik-017) 130810862-130840137 protein_coding
ENSMUST00000123049 (4930402H24Rik-013) 130777454-130810894 processed_transcript
ENSMUST00000133132 (4930402H24Rik-012) 130739000-130757451 processed_transcript
ENSMUST00000138758 (4930402H24Rik-003) 130712304-130730909 protein_coding
ENSMUST00000138990 (4930402H24Rik-015) 130810897-130840134 protein_coding
ENSMUST00000139684 (4930402H24Rik-004) 130710836-130719929 nonsense_mediated_decay
ENSMUST00000142128 (4930402H24Rik-009) 130803746-130814292 processed_transcript
ENSMUST00000144014 (4930402H24Rik-007) 130783433-130840111 retained_intron
ENSMUST00000144717 (4930402H24Rik-014) 130777257-130778333 processed_transcript
ENSMUST00000145851 (4930402H24Rik-010) 130739011-130770773 protein_coding
ENSMUST00000146975 (4930402H24Rik-016) 130812866-130906406 protein_coding
ENSMUST00000148924 (4930402H24Rik-006) 130748451-130840132 retained_intron
ENSMUST00000148932 (4930402H24Rik-002) 130719839-130731176 processed_transcript
ENSMUST00000151673 (4930402H24Rik-011) 130736521-130739500 retained_intron
ENSMUSG00000027312 (Atrn)
attractin 		ENSMUST00000028781 (Atrn-001) 130906495-131030333 protein_coding
ENSMUST00000132557 (Atrn-005) 130982785-130994575 retained_intron
ENSMUST00000134964 (Atrn-002) 130906501-131005415 retained_intron
ENSMUST00000151364 (Atrn-003) 130996177-131005443 retained_intron
ENSMUST00000156982 (Atrn-004) 130906931-130935932 retained_intron
ENSMUSG00000083953 (Gm14049)
predicted gene 14049 		ENSMUST00000121009 (Gm14049-001) 130987984-130988619 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00032V_0001ENSG00000088812ENST00000262919ENST00000446916ENSG00000088854ENST00000252032ENST00000619760ENSG00000201294ENST00000364424ENSG00000226632ENST00000430836ENSG00000230568ENST00000446317ENSG00000264957ENST00000579046CIL_00032V_0002ENSMUSG00000027309ENSMUST00000044766ENSMUST00000110243ENSMUST00000119422ENSMUST00000120316ENSMUST00000123049ENSMUST00000133132ENSMUST00000138758ENSMUST00000138990ENSMUST00000139684ENSMUST00000142128ENSMUST00000144014ENSMUST00000144717ENSMUST00000145851ENSMUST00000146975ENSMUST00000148924ENSMUST00000148932ENSMUST00000151673ENSMUSG00000027312ENSMUST00000028781ENSMUST00000132557ENSMUST00000134964ENSMUST00000151364ENSMUST00000156982ENSMUSG00000083953ENSMUST00000121009
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00032V_0001ENSG00000088812ENST00000262919ENST00000446916ENSG00000088854ENST00000252032ENSG00000201294ENST00000364424ENSG00000226632ENST00000430836ENSG00000230568ENST00000446317ENSG00000264957ENST00000579046CIL_00032V_0002ENSMUSG00000027309ENSMUST00000044766ENSMUST00000119422ENSMUST00000120316ENSMUSG00000027312ENSMUST00000028781ENSMUST00000134964ENSMUSG00000083953ENSMUST00000121009
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088812 ENST00000262919 3.249±0.00 1.970±0.00 3.855±0.00 11.013±0.09 3.590±0.30 2.159±0.31 2.830±1.34 9.109±1.80 4.392±1.15 3.131±0.62 2.350±0.00 4.173±0.66 3.788±0.56 4.822±2.03
ENST00000446916 4.866±0.00 2.869±0.00 N/A N/A 2.628±0.00 0.742±0.00 2.968±1.03 3.979±0.53 3.048±1.51 1.307±0.00 0.635±0.12 2.634±0.84 9.301±0.34 2.559±0.68
ENSG00000088854 ENST00000252032 4.477±0.00 1.796±0.00 1.747±0.00 7.420±0.78 2.985±0.00 2.769±0.56 5.390±0.00 1.857±1.36 3.076±2.55 2.244±0.61 1.302±0.00 3.075±1.32 2.995±1.13 7.123±2.84
ENST00000619760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201294 ENST00000364424 N/A N/A N/A N/A N/A N/A 0.557±0.00 N/A N/A N/A N/A N/A N/A 0.178±0.00
ENSG00000226632 ENST00000430836 0.104±0.00 0.129±0.00 0.821±0.00 0.513±0.28 0.567±0.34 N/A 0.038±0.01 N/A 1.591±0.00 0.915±0.80 0.591±0.00 0.319±0.09 0.202±0.00 0.299±0.28
ENSG00000230568 ENST00000446317 N/A 0.045±0.00 0.216±0.00 0.055±0.00 0.045±0.00 0.538±0.00 0.049±0.00 0.027±0.00 N/A N/A N/A 0.191±0.17 0.026±0.00 0.048±0.02
ENSG00000264957 ENST00000579046 N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027309 ENSMUST00000044766 16.068±4.70 9.508±1.11 20.399±1.94 23.340±10.21 11.134±3.63 5.292±0.37 5.664±1.02 9.553±3.33 3.797±1.06 8.889±2.72 0.439±0.14 10.187±2.43 6.693±1.63 6.311±1.96
ENSMUST00000110243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000119422 N/A N/A N/A N/A 8.776±0.00 N/A N/A N/A N/A N/A 0.389±0.00 N/A N/A 8.873±0.84
ENSMUST00000120316 N/A N/A N/A 128.238±0.00 N/A N/A N/A N/A N/A N/A N/A 102.494±0.00 92.065±35.41 206.880±0.00
ENSMUST00000123049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000027312 ENSMUST00000028781 8.734±0.73 6.855±0.82 40.151±0.81 13.602±3.78 4.751±0.83 4.528±0.79 3.920±0.21 7.055±0.31 6.611±2.60 6.709±0.27 3.127±0.20 6.989±1.36 6.244±2.55 1.978±0.78
ENSMUST00000132557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.771±0.00 N/A N/A
ENSMUST00000151364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083953 ENSMUST00000121009 0.074±0.01 N/A 0.368±0.09 0.134±0.04 0.150±0.00 0.161±0.00 N/A N/A 0.054±0.03 N/A N/A N/A 0.106±0.03 1.331±0.27

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