C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ras association (RalGDS/AF-6) domain family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027339 Rassf2 10090 - 2:131989415-132030258 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028814 Rassf2-001 131989415-132030001 protein_coding
  ENSMUST00000103182 Rassf2-005 131992852-132030202 protein_coding
  ENSMUST00000139047 Rassf2-003 132002914-132030258 protein_coding
  ENSMUST00000140791 Rassf2-004 132009732-132029166 protein_coding
  ENSMUST00000155829 Rassf2-002 132000922-132021173 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028814ENSMUST00000103182ENSMUST00000139047ENSMUST00000155829
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028814 1.890±1.06 0.555±0.09 0.305±0.05 0.867±0.40 2.439±0.19 0.641±0.13 0.198±0.01 0.185±0.06 0.075±0.05 1.157±0.26 0.066±0.02 1.774±0.49 0.107±0.10 0.584±0.01
ENSMUST00000103182 14.187±7.56 1.787±0.32 2.087±0.75 5.625±1.40 17.122±2.45 3.892±0.49 1.777±0.39 1.796±0.64 0.602±0.53 7.210±0.58 0.800±0.62 9.240±1.04 0.952±0.43 2.359±0.79
ENSMUST00000139047 5.792±0.00 3.072±0.66 N/A N/A 21.680±4.05 4.352±0.80 N/A 1.278±0.12 N/A 7.013±1.06 N/A 13.921±2.81 N/A N/A
ENSMUST00000155829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S5 CIL_0004S5_0002 CGP 2:131989415-132145108

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001503 IMP ossification
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0007049 IEA cell cycle
GO:0038168 IMP epidermal growth factor receptor signaling pathway via I-kappaB kinase/NF-kappaB cascade
GO:0045667 IMP regulation of osteoblast differentiation
GO:0045670 IMP regulation of osteoclast differentiation
GO:0046849 IMP bone remodeling
GO:0048872 IMP homeostasis of number of cells
GO:1901222 IMP regulation of NIK/NF-kappaB signaling
GO:1901223 IMP negative regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029865 rassf2a Ras association (RalGDS/AF-6) domain family member 2a protein_coding Danio_rerio
ENSDARG00000044044 rassf2b Ras association (RalGDS/AF-6) domain family 2b protein_coding Danio_rerio
ENSG00000101265 RASSF2 Ras association (RalGDS/AF-6) domain family member 2 protein_coding Homo_sapiens

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