C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras association (RalGDS/AF-6) domain family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028814 Rassf2-001 ENSMUSG00000027339 10090 - 2:131989415-132030001 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028814
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028814 1.890±1.06 0.555±0.09 0.305±0.05 0.867±0.40 2.439±0.19 0.641±0.13 0.198±0.01 0.185±0.06 0.075±0.05 1.157±0.26 0.066±0.02 1.774±0.49 0.107±0.10 0.584±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S5 CIL_0004S5_0002 CGP 2:131989415-132145108

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001503 IMP ossification
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0007049 IEA cell cycle
GO:0038168 IMP epidermal growth factor receptor signaling pathway via I-kappaB kinase/NF-kappaB cascade
GO:0045667 IMP regulation of osteoblast differentiation
GO:0045670 IMP regulation of osteoclast differentiation
GO:0046849 IMP bone remodeling
GO:0048872 IMP homeostasis of number of cells
GO:1901222 IMP regulation of NIK/NF-kappaB signaling
GO:1901223 IMP negative regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379376 RASSF2-201 protein_coding Homo_sapiens 0 1168
ENST00000379400 RASSF2-001 protein_coding Homo_sapiens 0 1164
ENST00000478553 RASSF2-002 processed_transcript Homo_sapiens 0 451

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