C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004S5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101265-ENSG00000089057 CGP 9606 20:4780023-5010293
GeneTranscriptPositionBiotype
ENSG00000089057 (SLC23A2)
solute carrier family 23 (ascorbic acid transporter), member 2 		ENST00000338244 (SLC23A2-002) 4852356-5001499 protein_coding
ENST00000379333 (SLC23A2-001) 4852356-5010293 protein_coding
ENST00000423430 (SLC23A2-004) 4859367-4899647 protein_coding
ENST00000468355 (SLC23A2-003) 4869588-5010270 processed_transcript
ENST00000496331 (SLC23A2-005) 4873877-4885991 processed_transcript
ENSG00000101265 (RASSF2)
Ras association (RalGDS/AF-6) domain family member 2 		ENST00000379376 (RASSF2-201) 4780026-4815123 protein_coding
ENST00000379400 (RASSF2-001) 4780023-4823645 protein_coding
ENST00000478553 (RASSF2-002) 4780023-4795504 processed_transcript
ENSG00000252096 (SNORA31)
Small nucleolar RNA SNORA31 		ENST00000516287 (SNORA31.1-207) 4868984-4869118 snoRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004S5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027339-ENSMUSG00000027340 CGP 10090 2:131989415-132145108
GeneTranscriptPositionBiotype
ENSMUSG00000027339 (Rassf2)
Ras association (RalGDS/AF-6) domain family member 2 		ENSMUST00000028814 (Rassf2-001) 131989415-132030001 protein_coding
ENSMUST00000103182 (Rassf2-005) 131992852-132030202 protein_coding
ENSMUST00000139047 (Rassf2-003) 132002914-132030258 protein_coding
ENSMUST00000140791 (Rassf2-004) 132009732-132029166 protein_coding
ENSMUST00000155829 (Rassf2-002) 132000922-132021173 retained_intron
ENSMUSG00000027340 (Slc23a2)
solute carrier family 23 (nucleobase transporters), member 2 		ENSMUST00000028815 (Slc23a2-001) 132052496-132145108 protein_coding
ENSMUST00000127724 (Slc23a2-002) 132074834-132145108 processed_transcript
ENSMUST00000128899 (Slc23a2-003) 132094224-132111448 protein_coding
ENSMUST00000133407 (Slc23a2-004) 132089109-132094629 processed_transcript
ENSMUST00000137910 (Slc23a2-006) 132060708-132067040 processed_transcript
ENSMUST00000148749 (Slc23a2-007) 132055414-132056685 processed_transcript
ENSMUST00000154009 (Slc23a2-005) 132075606-132078008 processed_transcript
ENSMUSG00000082990 (Gm14052)
predicted gene 14052 		ENSMUST00000121434 (Gm14052-001) 132099869-132100899 processed_pseudogene
ENSMUSG00000086756 (Gm14051)
predicted gene 14051 		ENSMUST00000131603 (Gm14051-001) 132144533-132220250 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004S5_0001ENSG00000089057ENST00000338244ENST00000379333ENST00000423430ENST00000468355ENST00000496331ENSG00000101265ENST00000379376ENST00000379400ENST00000478553ENSG00000252096ENST00000516287CIL_0004S5_0002ENSMUSG00000027339ENSMUST00000028814ENSMUST00000103182ENSMUST00000139047ENSMUST00000140791ENSMUST00000155829ENSMUSG00000027340ENSMUST00000028815ENSMUST00000127724ENSMUST00000128899ENSMUST00000133407ENSMUST00000137910ENSMUST00000148749ENSMUST00000154009ENSMUSG00000082990ENSMUST00000121434ENSMUSG00000086756ENSMUST00000131603
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004S5_0001ENSG00000089057ENST00000338244ENST00000379333ENSG00000101265ENST00000379376ENST00000379400ENST00000478553ENSG00000252096ENST00000516287CIL_0004S5_0002ENSMUSG00000027339ENSMUST00000028814ENSMUST00000103182ENSMUST00000139047ENSMUST00000155829ENSMUSG00000027340ENSMUST00000028815ENSMUSG00000082990ENSMUST00000121434ENSMUSG00000086756ENSMUST00000131603
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089057 ENST00000338244 2.218±0.00 3.303±0.00 N/A 7.782±2.82 1.993±0.00 1.151±0.00 1.664±0.00 3.551±1.74 2.929±0.68 1.995±0.62 N/A 4.403±3.34 2.470±1.09 3.232±2.00
ENST00000379333 N/A N/A 1.686±0.00 N/A N/A N/A 0.281±0.00 N/A N/A N/A 0.341±0.00 N/A N/A N/A
ENST00000423430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101265 ENST00000379376 2.012±0.00 3.943±0.00 N/A 4.016±0.00 0.951±0.00 2.309±0.00 0.284±0.00 1.017±0.20 2.458±1.60 4.832±0.00 N/A 1.627±1.06 1.011±0.00 4.988±2.47
ENST00000379400 7.368±0.00 4.105±0.00 N/A 52.915±0.00 2.408±0.12 2.822±0.00 1.557±0.00 0.903±0.00 1.702±0.54 6.363±2.92 N/A 5.537±4.77 1.802±0.00 11.647±9.07
ENST00000478553 N/A N/A 0.624±0.00 N/A N/A N/A N/A 0.544±0.00 N/A N/A N/A 0.499±0.00 N/A N/A
ENSG00000252096 ENST00000516287 N/A N/A N/A N/A N/A N/A 0.486±0.00 N/A N/A N/A N/A 5.894±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027339 ENSMUST00000028814 1.890±1.06 0.555±0.09 0.305±0.05 0.867±0.40 2.439±0.19 0.641±0.13 0.198±0.01 0.185±0.06 0.075±0.05 1.157±0.26 0.066±0.02 1.774±0.49 0.107±0.10 0.584±0.01
ENSMUST00000103182 14.187±7.56 1.787±0.32 2.087±0.75 5.625±1.40 17.122±2.45 3.892±0.49 1.777±0.39 1.796±0.64 0.602±0.53 7.210±0.58 0.800±0.62 9.240±1.04 0.952±0.43 2.359±0.79
ENSMUST00000139047 5.792±0.00 3.072±0.66 N/A N/A 21.680±4.05 4.352±0.80 N/A 1.278±0.12 N/A 7.013±1.06 N/A 13.921±2.81 N/A N/A
ENSMUST00000140791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A
ENSMUSG00000027340 ENSMUST00000028815 7.927±2.59 42.629±4.15 6.960±1.84 10.289±1.62 8.189±3.49 20.267±2.76 4.278±0.27 7.001±0.65 3.242±2.52 36.129±11.77 1.603±0.76 32.210±12.98 8.053±3.78 1.506±0.62
ENSMUST00000127724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082990 ENSMUST00000121434 0.514±0.34 1.037±0.57 0.394±0.11 0.532±0.34 1.034±0.39 1.493±1.05 0.333±0.12 0.299±0.11 0.101±0.05 1.490±0.33 N/A 0.864±0.59 0.313±0.16 0.175±0.10
ENSMUSG00000086756 ENSMUST00000131603 N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.733±0.56

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