C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TBC1 domain family, member 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027465 Tbc1d20 10090 + 2:152293828-152313996 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028963 Tbc1d20-001 152293828-152313996 protein_coding
  ENSMUST00000140482 Tbc1d20-002 152293872-152313996 retained_intron
  ENSMUST00000141373 Tbc1d20-003 152308199-152310818 retained_intron
  ENSMUST00000144252 Tbc1d20-004 152293851-152308082 protein_coding
  ENSMUST00000147591 Tbc1d20-005 152294180-152308428 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028963ENSMUST00000140482
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028963 46.982±9.10 37.041±4.84 17.662±0.89 11.787±2.82 33.027±3.48 24.723±6.23 17.952±0.64 26.014±0.68 10.534±1.89 29.323±5.20 9.553±1.46 23.943±4.05 21.731±14.96 46.565±17.66
ENSMUST00000140482 4.639±0.20 9.096±2.89 2.968±0.00 2.000±0.40 6.600±0.85 6.156±1.70 N/A N/A 1.427±0.36 5.347±1.15 N/A 5.850±1.63 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001675 IMP acrosome assembly
GO:0002088 IMP lens development in camera-type eye
GO:0005097 IEA Rab GTPase activator activity
GO:0005515 IEA protein binding
GO:0005789 IEA endoplasmic reticulum membrane
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0007030 IMP Golgi organization
GO:0007283 IMP spermatogenesis
GO:0008584 IMP male gonad development
GO:0016021 IEA integral component of membrane
GO:0017137 IEA Rab GTPase binding
GO:0019068 IEA virion assembly
GO:0030173 IEA integral component of Golgi membrane
GO:0031965 IEA nuclear membrane
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0033126 IEA positive regulation of GTP catabolic process
GO:0034389 IMP lipid particle organization
GO:0043010 IMP camera-type eye development
GO:0070309 IMP lens fiber cell morphogenesis
GO:0072520 IMP seminiferous tubule development
GO:0090110 IEA cargo loading into COPII-coated vesicle
GO:1902953 IEA positive regulation of ER to Golgi vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032298 tbc1d20 TBC1 domain family, member 20 protein_coding Danio_rerio
ENSG00000125875 TBC1D20 TBC1 domain family, member 20 protein_coding Homo_sapiens

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