C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TBC1 domain family, member 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125875 TBC1D20 9606 - 20:435480-462553 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354200 TBC1D20-004 435480-462553 protein_coding
  ENST00000461188 TBC1D20-001 435480-441892 processed_transcript
  ENST00000461304 TBC1D20-002 435480-462531 nonsense_mediated_decay
  ENST00000494633 TBC1D20-003 436283-462543 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354200ENST00000461188ENST00000461304ENST00000494633
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354200 10.077±0.00 7.528±0.00 0.300±0.00 3.766±2.53 5.301±4.53 4.249±3.85 2.782±1.83 9.845±0.00 1.570±0.19 5.203±3.92 4.400±0.00 8.264±5.18 8.745±1.67 7.500±5.71
ENST00000461188 N/A 1.029±0.00 0.807±0.00 0.443±0.00 N/A N/A 0.203±0.00 0.202±0.00 0.780±0.00 1.136±0.00 N/A 1.507±0.99 N/A 1.290±0.00
ENST00000461304 N/A N/A N/A N/A N/A 1.007±0.00 N/A 0.678±0.00 1.775±0.00 2.940±2.05 2.702±0.00 5.888±0.00 3.821±0.00 8.868±0.00
ENST00000494633 N/A N/A 0.335±0.00 2.788±0.47 1.648±0.00 1.646±0.00 2.276±0.00 0.169±0.00 1.149±0.70 0.656±0.00 2.248±0.09 1.137±0.00 N/A 2.468±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0001 VISTA 20:23407-624368

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001675 IEA acrosome assembly
GO:0002088 IEA lens development in camera-type eye
GO:0005097 IDA:IEA Rab GTPase activator activity
GO:0005515 IPI protein binding
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006888 IMP ER to Golgi vesicle-mediated transport
GO:0007030 IMP Golgi organization
GO:0007283 IEA spermatogenesis
GO:0008584 IEA male gonad development
GO:0017137 IPI Rab GTPase binding
GO:0019068 IMP virion assembly
GO:0030173 IDA integral component of Golgi membrane
GO:0031965 IDA nuclear membrane
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IMP positive regulation of Rab GTPase activity
GO:0033126 IMP positive regulation of GTP catabolic process
GO:0034389 IEA lipid particle organization
GO:0043010 IEA camera-type eye development
GO:0070309 IEA lens fiber cell morphogenesis
GO:0072520 IEA seminiferous tubule development
GO:0090110 IMP cargo loading into COPII-coated vesicle
GO:1902953 IMP positive regulation of ER to Golgi vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032298 tbc1d20 TBC1 domain family, member 20 protein_coding Danio_rerio
ENSMUSG00000027465 Tbc1d20 TBC1 domain family, member 20 protein_coding Mus_musculus

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