C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: acyl-CoA synthetase short-chain family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027605 Acss2 10090 + 2:155517948-155585724 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029135 Acss2-001 155517948-155562746 protein_coding
  ENSMUST00000065973 Acss2-008 155518057-155585724 protein_coding
  ENSMUST00000103142 Acss2-003 155518107-155562080 protein_coding
  ENSMUST00000131054 Acss2-005 155518069-155552387 retained_intron
  ENSMUST00000133654 Acss2-004 155518107-155562080 nonsense_mediated_decay
  ENSMUST00000143169 Acss2-007 155549221-155549858 retained_intron
  ENSMUST00000148870 Acss2-010 155572862-155576980 retained_intron
  ENSMUST00000149788 Acss2-006 155518033-155525291 retained_intron
  ENSMUST00000151781 Acss2-002 155549232-155557364 protein_coding
  ENSMUST00000153975 Acss2-009 155568550-155585266 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029135ENSMUST00000103142ENSMUST00000133654ENSMUST00000151781
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029135 121.770±14.86 67.671±15.08 9.773±1.60 7.999±1.16 164.660±22.87 38.107±6.88 10.740±3.61 72.996±11.23 60.739±45.17 18.585±5.34 8.629±0.94 13.143±5.66 4.205±2.09 21.934±8.60
ENSMUST00000103142 N/A N/A N/A N/A N/A N/A 5.722±0.51 N/A N/A N/A 6.809±1.02 N/A N/A N/A
ENSMUST00000133654 56.411±3.38 38.045±0.99 N/A 17.082±0.00 N/A N/A N/A N/A N/A N/A N/A 9.956±1.37 5.720±1.28 13.713±0.00
ENSMUST00000151781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.035±0.00 10.106±0.00 44.982±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BC CIL_0005BC_0002 CGP 2:155490379-155585724
CIL_0005BF CIL_0005BF_0002 CGP 2:155517948-155592810

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003987 IDA acetate-CoA ligase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006085 IDA acetyl-CoA biosynthetic process
GO:0008610 IEA lipid biosynthetic process
GO:0019413 IEA acetate biosynthetic process
GO:0019542 IEA propionate biosynthetic process
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037781 acss2 acyl-CoA synthetase short-chain family member 2 protein_coding Danio_rerio
ENSG00000131069 ACSS2 acyl-CoA synthetase short-chain family member 2 protein_coding Homo_sapiens

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