C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: acyl-CoA synthetase short-chain family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131069 ACSS2 9606 + 20:34872146-34927962 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000253382 ACSS2-006 34876614-34927962 protein_coding
  ENST00000360596 ACSS2-001 34876435-34927962 protein_coding
  ENST00000461051 ACSS2-026 34875017-34882996 processed_transcript
  ENST00000464399 ACSS2-022 34882827-34913805 processed_transcript
  ENST00000467019 ACSS2-021 34876612-34913949 processed_transcript
  ENST00000468550 ACSS2-023 34913093-34919572 processed_transcript
  ENST00000470315 ACSS2-008 34921648-34922366 retained_intron
  ENST00000473172 ACSS2-020 34876590-34913496 protein_coding
  ENST00000475459 ACSS2-013 34874979-34920613 nonsense_mediated_decay
  ENST00000476922 ACSS2-010 34876622-34927962 processed_transcript
  ENST00000477932 ACSS2-005 34876590-34927962 nonsense_mediated_decay
  ENST00000480274 ACSS2-017 34876580-34913503 nonsense_mediated_decay
  ENST00000480978 ACSS2-009 34876593-34926938 nonsense_mediated_decay
  ENST00000481284 ACSS2-002 34874963-34927962 nonsense_mediated_decay
  ENST00000481971 ACSS2-014 34872882-34913810 processed_transcript
  ENST00000484354 ACSS2-016 34876572-34913188 protein_coding
  ENST00000488172 ACSS2-012 34874942-34913822 protein_coding
  ENST00000490046 ACSS2-015 34872146-34882990 processed_transcript
  ENST00000490464 ACSS2-025 34920949-34921418 retained_intron
  ENST00000491533 ACSS2-024 34920532-34926276 retained_intron
  ENST00000493250 ACSS2-003 34913903-34920709 processed_transcript
  ENST00000493805 ACSS2-019 34876590-34913419 protein_coding
  ENST00000494727 ACSS2-007 34922842-34927205 retained_intron
  ENST00000497927 ACSS2-011 34874942-34908903 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253382ENST00000360596ENST00000476922ENST00000477932ENST00000481284ENST00000491533ENST00000494727
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253382 N/A N/A N/A N/A N/A N/A 15.906±13.87 N/A N/A N/A 29.479±18.65 N/A N/A 2.575±0.00
ENST00000360596 19.543±0.00 15.037±0.00 N/A 4.752±4.03 38.674±31.96 10.188±0.58 3.063±0.00 13.390±4.83 9.359±4.57 4.742±2.75 N/A 4.024±1.31 7.180±2.04 3.902±1.14
ENST00000476922 N/A N/A N/A 6.431±0.00 N/A N/A N/A N/A 9.438±0.00 N/A N/A N/A N/A N/A
ENST00000477932 N/A N/A N/A N/A N/A N/A N/A 7.754±0.00 5.351±0.00 N/A N/A 6.514±0.00 3.558±0.04 N/A
ENST00000481284 N/A N/A 2.091±0.00 0.299±0.00 N/A N/A N/A N/A N/A 0.680±0.00 N/A N/A N/A N/A
ENST00000491533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.961±0.00 N/A N/A
ENST00000494727 N/A N/A 2.775±0.00 N/A N/A 11.356±0.00 N/A N/A N/A 2.272±0.00 N/A 2.856±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BC CIL_0005BC_0001 CGP 20:34844720-34927962
CIL_0005BF CIL_0005BF_0001 CGP 20:34872146-34955817

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0003987 IDA acetate-CoA ligase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006069 TAS ethanol oxidation
GO:0006085 IEA acetyl-CoA biosynthetic process
GO:0006805 TAS xenobiotic metabolic process
GO:0008152 IEA metabolic process
GO:0008610 IMP lipid biosynthetic process
GO:0016208 IC AMP binding
GO:0019413 IEA acetate biosynthetic process
GO:0019427 IEA acetyl-CoA biosynthetic process from acetate
GO:0019542 IEA propionate biosynthetic process
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037781 acss2 acyl-CoA synthetase short-chain family member 2 protein_coding Danio_rerio
ENSMUSG00000027605 Acss2 acyl-CoA synthetase short-chain family member 2 protein_coding Mus_musculus

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