C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-CoA synthetase short-chain family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029135 Acss2-001 ENSMUSG00000027605 10090 + 2:155517948-155562746 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029135
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029135 121.770±14.86 67.671±15.08 9.773±1.60 7.999±1.16 164.660±22.87 38.107±6.88 10.740±3.61 72.996±11.23 60.739±45.17 18.585±5.34 8.629±0.94 13.143±5.66 4.205±2.09 21.934±8.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BC CIL_0005BC_0002 CGP 2:155490379-155585724
CIL_0005BF CIL_0005BF_0002 CGP 2:155517948-155592810

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003987 IDA acetate-CoA ligase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006085 IDA acetyl-CoA biosynthetic process
GO:0008610 IEA lipid biosynthetic process
GO:0019413 IEA acetate biosynthetic process
GO:0019542 IEA propionate biosynthetic process
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253382 ACSS2-006 protein_coding Homo_sapiens 0 1764
ENST00000360596 ACSS2-001 protein_coding Homo_sapiens 0 2885
ENST00000461051 ACSS2-026 processed_transcript Homo_sapiens 0 279
ENST00000464399 ACSS2-022 processed_transcript Homo_sapiens 0 346
ENST00000467019 ACSS2-021 processed_transcript Homo_sapiens 0 466
ENST00000468550 ACSS2-023 processed_transcript Homo_sapiens 0 401
ENST00000473172 ACSS2-020 protein_coding Homo_sapiens 0 497
ENST00000475459 ACSS2-013 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000476922 ACSS2-010 processed_transcript Homo_sapiens 0 468
ENST00000477932 ACSS2-005 nonsense_mediated_decay Homo_sapiens 0 1759
ENST00000480274 ACSS2-017 nonsense_mediated_decay Homo_sapiens 0 538
ENST00000480978 ACSS2-009 nonsense_mediated_decay Homo_sapiens 0 632
ENST00000481284 ACSS2-002 nonsense_mediated_decay Homo_sapiens 0 2627
ENST00000481971 ACSS2-014 processed_transcript Homo_sapiens 0 616
ENST00000484354 ACSS2-016 protein_coding Homo_sapiens 0 490
ENST00000488172 ACSS2-012 protein_coding Homo_sapiens 0 628
ENST00000490046 ACSS2-015 processed_transcript Homo_sapiens 0 278
ENST00000490464 ACSS2-025 retained_intron Homo_sapiens 0 302
ENST00000491533 ACSS2-024 retained_intron Homo_sapiens 0 1266
ENST00000493250 ACSS2-003 processed_transcript Homo_sapiens 0 634
ENST00000493805 ACSS2-019 protein_coding Homo_sapiens 0 497
ENST00000494727 ACSS2-007 retained_intron Homo_sapiens 0 806
ENST00000497927 ACSS2-011 processed_transcript Homo_sapiens 0 276

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