C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 1700013F07 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027886 1700013F07Rik 10090 + 3:108534150-108544723 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029485 1700013F07Rik-001 108537541-108544723 protein_coding
  ENSMUST00000138210 1700013F07Rik-002 108537534-108543081 processed_transcript
  ENSMUST00000138375 1700013F07Rik-003 108534150-108537693 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000029485ENSMUST00000138210ENSMUST00000138375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000029485 0.112±0.04 N/A 0.073±0.01 0.702±0.18 0.147±0.01 0.182±0.08 0.211±0.12 0.117±0.05 0.043±0.03 2.863±0.87 2.205±1.02 0.009±0.00 280.016±113.88
ENSMUST00000138210 0.159±0.06 0.121±0.00 0.017±0.00 0.235±0.00 0.091±0.00 N/A 0.067±0.00 0.090±0.03 N/A 1.114±0.38 0.580±0.42 N/A N/A
ENSMUST00000138375 N/A N/A N/A N/A N/A 0.204±0.00 N/A N/A N/A N/A N/A 0.160±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034457 C8H1orf194 chromosome 1 open reading frame 194 protein_coding Danio_rerio
ENSG00000179902 C1orf194 chromosome 1 open reading frame 194 protein_coding Homo_sapiens

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