C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CD1d1 antigen
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028076 Cd1d1 10090 - 3:86995834-86999441 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029717 Cd1d1-001 86995834-86999441 protein_coding
  ENSMUST00000063869 Cd1d1-002 86995834-86999309 protein_coding
  ENSMUST00000107620 Cd1d1-005 86995834-86997947 retained_intron
  ENSMUST00000132131 Cd1d1-004 86998118-86998954 retained_intron
  ENSMUST00000142793 Cd1d1-003 86998389-86999341 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029717ENSMUST00000063869ENSMUST00000107620ENSMUST00000132131ENSMUST00000142793
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029717 37.568±26.24 65.196±6.39 0.519±0.18 2.073±1.46 16.723±4.67 1.364±0.38 1.378±1.06 2.373±1.10 42.394±37.06 4.588±1.13 0.263±0.06 7.507±2.95 0.885±0.44 0.270±0.15
ENSMUST00000063869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.567±0.00 N/A N/A N/A
ENSMUST00000107620 N/A N/A N/A 0.980±0.78 N/A 0.599±0.00 0.840±0.00 N/A N/A 1.462±0.00 0.220±0.05 2.113±0.00 0.156±0.00 0.092±0.04
ENSMUST00000132131 N/A N/A N/A 0.508±0.00 N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A N/A
ENSMUST00000142793 144.898±97.90 99.373±16.11 2.545±0.00 5.523±4.28 72.248±7.69 3.722±1.04 1.972±1.22 4.806±1.33 41.028±23.65 7.435±1.24 0.388±0.11 15.854±6.24 1.179±0.32 0.407±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088B CIL_00088B_0002 VISTA 3:86399823-87000905
CIL_0008VX CIL_0008VX_0002 VISTA 3:86549163-87151975

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001916 IDA positive regulation of T cell mediated cytotoxicity
GO:0005515 IPI protein binding
GO:0005764 IDA lysosome
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0006955 IEA immune response
GO:0009897 IDA external side of plasma membrane
GO:0016021 IEA integral component of membrane
GO:0019882 IDA antigen processing and presentation
GO:0030883 IDA endogenous lipid antigen binding
GO:0042608 IDA T cell receptor binding
GO:0043032 IDA positive regulation of macrophage activation
GO:0045059 IMP positive thymic T cell selection
GO:0045078 IMP positive regulation of interferon-gamma biosynthetic process
GO:0045086 IDA positive regulation of interleukin-2 biosynthetic process
GO:0045087 IEA innate immune response
GO:0045404 IMP positive regulation of interleukin-4 biosynthetic process
GO:0048007 IDA antigen processing and presentation, exogenous lipid antigen via MHC class Ib
GO:0050776 IMP regulation of immune response
GO:0051135 IDA positive regulation of NK T cell activation
GO:0051138 IMP positive regulation of NK T cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000158473 CD1D CD1d molecule protein_coding Homo_sapiens

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