C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008VX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1614 VISTA 9606 4:149875321-150478147
GeneTranscriptPositionBiotype
ENSG00000170390 (DCLK2)
doublecortin-like kinase 2 		ENST00000296550 (DCLK2-001) 150078274-150257457 protein_coding
ENST00000302176 (DCLK2-003) 150079028-150257438 protein_coding
ENST00000411937 (DCLK2-002) 150078989-150257438 nonsense_mediated_decay
ENST00000506325 (DCLK2-004) 150079028-150256247 protein_coding
ENST00000507694 (DCLK2-005) 150175443-150198103 processed_transcript
ENSG00000198589 (LRBA)
LPS-responsive vesicle trafficking, beach and anchor containing 		ENST00000357115 (LRBA-002) 150264659-151015497 protein_coding
ENST00000502839 (LRBA-011) 150840540-150848887 protein_coding
ENST00000503716 (LRBA-004) 150264659-150581722 processed_transcript
ENST00000507224 (LRBA-008) 150314723-151015277 protein_coding
ENST00000508396 (LRBA-012) 150683603-150683963 processed_transcript
ENST00000508606 (LRBA-014) 150265566-150302711 protein_coding
ENST00000509835 (LRBA-003) 150264661-150849537 protein_coding
ENST00000510157 (LRBA-010) 150265026-150315634 retained_intron
ENST00000510413 (LRBA-001) 150264531-151015267 protein_coding
ENST00000510841 (LRBA-006) 151012829-151015727 retained_intron
ENST00000513021 (LRBA-013) 150490957-150679667 processed_transcript
ENST00000514435 (LRBA-007) 151012805-151015284 retained_intron
ENST00000515096 (LRBA-009) 150264659-150311369 retained_intron
ENSG00000234828 (RP11-526A4.1)
 ENST00000502345 (RP11-526A4.1-005) 149733341-149815814 lincRNA
ENST00000506683 (RP11-526A4.1-002) 149352017-149553181 lincRNA
ENST00000508106 (RP11-526A4.1-003) 149587990-149896233 lincRNA
ENST00000510975 (RP11-526A4.1-004) 149737614-149815814 lincRNA
ENST00000511993 (RP11-526A4.1-001) 149429932-149815828 lincRNA
ENSG00000248521 (RP11-174F8.1)
 ENST00000514501 (RP11-174F8.1-001) 150422645-150423642 processed_pseudogene
CIL_0008VX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1614 VISTA 10090 3:86549163-87151975
GeneTranscriptPositionBiotype
ENSMUSG00000028076 (Cd1d1)
CD1d1 antigen 		ENSMUST00000029717 (Cd1d1-001) 86995834-86999441 protein_coding
ENSMUST00000063869 (Cd1d1-002) 86995834-86999309 protein_coding
ENSMUST00000107620 (Cd1d1-005) 86995834-86997947 retained_intron
ENSMUST00000132131 (Cd1d1-004) 86998118-86998954 retained_intron
ENSMUST00000142793 (Cd1d1-003) 86998389-86999341 retained_intron
ENSMUSG00000028078 (Dclk2)
doublecortin-like kinase 2 		ENSMUST00000029719 (Dclk2-201) 86786150-86920884 protein_coding
ENSMUSG00000028080 (Lrba)
LPS-responsive beige-like anchor 		ENSMUST00000107635 (Lrba-201) 86224690-86782693 protein_coding
ENSMUSG00000041734 (Kirrel)
kin of IRRE like (Drosophila) 		ENSMUST00000041732 (Kirrel-002) 87084628-87174550 protein_coding
ENSMUST00000107618 (Kirrel-201) 87078601-87174747 protein_coding
ENSMUST00000159976 (Kirrel-001) 87078593-87174700 protein_coding
ENSMUSG00000041750 (Cd1d2)
CD1d2 antigen 		ENSMUST00000041920 (Cd1d2-201) 86986586-86989533 protein_coding
ENSMUSG00000094392 (Gm3788)
predicted gene 3788 		ENSMUST00000119949 (Gm3788-001) 86672033-86672168 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008VX_0001ENSG00000170390ENST00000296550ENST00000302176ENST00000411937ENST00000506325ENST00000507694ENSG00000198589ENST00000357115ENST00000502839ENST00000503716ENST00000507224ENST00000508396ENST00000508606ENST00000509835ENST00000510157ENST00000510413ENST00000510841ENST00000513021ENST00000514435ENST00000515096ENSG00000234828ENST00000502345ENST00000506683ENST00000508106ENST00000510975ENST00000511993ENSG00000248521ENST00000514501CIL_0008VX_0002ENSMUSG00000028076ENSMUST00000029717ENSMUST00000063869ENSMUST00000107620ENSMUST00000132131ENSMUST00000142793ENSMUSG00000028078ENSMUST00000029719ENSMUSG00000028080ENSMUST00000107635ENSMUSG00000041734ENSMUST00000041732ENSMUST00000107618ENSMUST00000159976ENSMUSG00000041750ENSMUST00000041920ENSMUSG00000094392ENSMUST00000119949
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008VX_0001ENSG00000170390ENST00000296550ENST00000302176ENST00000411937ENST00000506325ENST00000507694ENSG00000198589ENST00000357115ENST00000503716ENST00000507224ENST00000509835ENST00000510157ENST00000510413ENSG00000234828ENST00000502345ENST00000508106ENST00000510975ENST00000511993ENSG00000248521ENST00000514501CIL_0008VX_0002ENSMUSG00000028076ENSMUST00000029717ENSMUST00000063869ENSMUST00000107620ENSMUST00000132131ENSMUST00000142793ENSMUSG00000028078ENSMUST00000029719ENSMUSG00000028080ENSMUST00000107635ENSMUSG00000041734ENSMUST00000041732ENSMUST00000107618ENSMUST00000159976ENSMUSG00000041750ENSMUST00000041920ENSMUSG00000094392ENSMUST00000119949
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000170390 ENST00000296550 1.302±0.00 0.729±0.00 N/A 5.819±2.49 0.547±0.00 0.766±0.39 1.306±0.76 0.453±0.00 N/A 0.681±0.00 0.193±0.02 1.196±0.86 0.415±0.16 1.326±0.09
ENST00000302176 N/A N/A 0.351±0.00 6.784±0.51 N/A N/A 0.972±0.48 N/A 0.687±0.00 N/A N/A N/A 0.252±0.00 1.457±0.00
ENST00000411937 N/A 0.456±0.00 N/A 4.616±0.00 1.015±0.00 1.355±0.00 1.134±0.00 N/A 0.073±0.00 0.585±0.00 N/A 1.459±0.50 0.557±0.18 0.788±0.39
ENST00000506325 N/A N/A 0.190±0.00 3.238±0.00 0.444±0.00 N/A N/A N/A N/A 0.685±0.00 N/A 0.161±0.00 N/A N/A
ENST00000507694 N/A N/A N/A N/A N/A N/A N/A N/A 0.337±0.00 N/A 0.571±0.00 N/A N/A N/A
ENSG00000198589 ENST00000357115 0.491±0.00 N/A 1.421±0.00 0.620±0.00 0.503±0.00 4.293±0.00 0.673±0.00 N/A 0.946±0.28 1.237±0.00 N/A 0.439±0.00 N/A 0.869±0.00
ENST00000502839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503716 N/A N/A N/A N/A N/A 2.584±0.00 N/A 2.550±0.00 N/A N/A N/A N/A N/A N/A
ENST00000507224 N/A N/A 8.927±0.00 2.659±0.00 5.504±0.00 9.483±0.00 1.316±0.00 2.326±0.00 7.318±0.00 5.458±0.00 1.169±0.00 4.109±0.00 N/A N/A
ENST00000508396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509835 1.871±0.00 2.854±0.00 N/A 1.349±0.39 2.616±0.32 1.938±0.00 1.429±0.58 5.647±0.00 1.170±0.00 2.096±0.00 0.943±0.00 4.058±1.77 1.231±0.91 4.948±0.29
ENST00000510157 1.888±0.00 5.331±0.00 N/A N/A 2.427±0.00 5.545±0.00 N/A 7.519±0.00 N/A N/A N/A N/A N/A 5.170±0.00
ENST00000510413 N/A 0.932±0.00 N/A N/A N/A 0.643±0.00 2.021±0.00 2.271±0.00 N/A N/A 0.747±0.00 1.814±0.00 0.434±0.00 1.479±0.00
ENST00000510841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234828 ENST00000502345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.410±0.00
ENST00000506683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508106 0.266±0.00 0.509±0.00 N/A N/A 0.326±0.00 0.825±0.27 0.331±0.17 0.449±0.00 0.103±0.00 N/A N/A 0.174±0.15 0.119±0.00 N/A
ENST00000510975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.532±0.00
ENST00000511993 N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.661±0.00
ENSG00000248521 ENST00000514501 N/A 0.040±0.00 0.050±0.00 0.170±0.00 0.791±0.00 0.442±0.00 0.135±0.00 0.021±0.00 0.255±0.00 0.849±0.00 0.017±0.00 0.124±0.13 N/A 0.058±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028076 ENSMUST00000029717 37.568±26.24 65.196±6.39 0.519±0.18 2.073±1.46 16.723±4.67 1.364±0.38 1.378±1.06 2.373±1.10 42.394±37.06 4.588±1.13 0.263±0.06 7.507±2.95 0.885±0.44 0.270±0.15
ENSMUST00000063869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.567±0.00 N/A N/A N/A
ENSMUST00000107620 N/A N/A N/A 0.980±0.78 N/A 0.599±0.00 0.840±0.00 N/A N/A 1.462±0.00 0.220±0.05 2.113±0.00 0.156±0.00 0.092±0.04
ENSMUST00000132131 N/A N/A N/A 0.508±0.00 N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A N/A
ENSMUST00000142793 144.898±97.90 99.373±16.11 2.545±0.00 5.523±4.28 72.248±7.69 3.722±1.04 1.972±1.22 4.806±1.33 41.028±23.65 7.435±1.24 0.388±0.11 15.854±6.24 1.179±0.32 0.407±0.19
ENSMUSG00000028078 ENSMUST00000029719 0.562±0.27 1.148±0.45 0.440±0.21 32.338±11.74 0.884±0.43 0.868±0.28 0.228±0.11 0.595±0.30 0.399±0.34 0.569±0.18 0.200±0.07 2.004±0.79 0.367±0.26 0.253±0.12
ENSMUSG00000028080 ENSMUST00000107635 3.094±0.93 2.817±0.77 1.743±0.32 1.970±0.78 3.300±0.98 10.618±0.93 1.348±0.74 6.900±2.92 1.801±0.74 3.879±1.01 2.299±0.80 4.515±0.92 2.541±0.33 1.485±0.29
ENSMUSG00000041734 ENSMUST00000041732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.707±0.89 3.756±0.00 0.361±0.02
ENSMUST00000107618 7.252±3.00 4.195±0.62 4.323±0.44 2.083±1.65 3.448±1.65 2.270±0.57 1.771±0.32 1.995±0.78 0.317±0.13 2.624±0.85 0.743±0.19 4.866±2.25 3.000±1.18 0.168±0.07
ENSMUST00000159976 6.706±2.73 2.959±0.58 6.160±0.35 1.378±1.27 5.152±1.06 2.166±1.47 0.855±0.35 2.609±0.86 0.479±0.18 4.252±0.69 0.450±0.27 4.418±1.25 3.836±2.83 0.471±0.27
ENSMUSG00000041750 ENSMUST00000041920 0.692±0.45 0.165±0.10 0.007±0.00 0.290±0.14 0.123±0.06 0.087±0.03 0.027±0.00 0.089±0.03 0.175±0.13 0.188±0.07 N/A 0.211±0.11 0.023±0.01 0.025±0.00
ENSMUSG00000094392 ENSMUST00000119949 N/A N/A 7.831±0.00 8.111±0.00 N/A N/A N/A N/A N/A N/A 3.013±0.00 73.608±4.22 47.808±56.08 N/A

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