C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family D (ALD), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028127 Abcd3 10090 - 3:121758909-121815302 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029770 Abcd3-001 121758909-121815302 protein_coding
  ENSMUST00000161742 Abcd3-002 121796037-121815207 retained_intron
  ENSMUST00000162262 Abcd3-003 121786009-121814909 processed_transcript
  ENSMUST00000162299 Abcd3-004 121758909-121768643 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029770ENSMUST00000161742
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029770 5.984±2.03 5.275±1.64 18.482±6.22 7.172±3.45 3.903±1.06 7.503±3.54 2.936±1.51 18.996±7.13 21.598±15.85 8.962±3.75 8.468±1.84 3.734±4.25 10.510±4.10 1.800±1.44
ENSMUST00000161742 N/A 19.766±6.89 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DI CIL_0009DI_0002 VISTA 3:121653542-122254391
CIL_0009DJ CIL_0009DJ_0002 VISTA 3:121747471-122349247

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005777 IDA peroxisome
GO:0005778 IDA peroxisomal membrane
GO:0005782 IEA peroxisomal matrix
GO:0006200 IEA ATP catabolic process
GO:0006635 IEA fatty acid beta-oxidation
GO:0007031 IEA peroxisome organization
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0042760 IEA very long-chain fatty acid catabolic process
GO:0042803 IEA protein homodimerization activity
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015167 abcd3a ATP-binding cassette, sub-family D (ALD), member 3a protein_coding Danio_rerio
ENSG00000117528 ABCD3 ATP-binding cassette, sub-family D (ALD), member 3 protein_coding Homo_sapiens

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