C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAR-related orphan receptor gamma
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028150 Rorc 10090 + 3:94372794-94398276 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029795 Rorc-001 94372794-94397840 protein_coding
  ENSMUST00000098877 Rorc-003 94377516-94397648 protein_coding
  ENSMUST00000107292 Rorc-002 94377432-94398276 protein_coding
  ENSMUST00000126783 Rorc-004 94377460-94397646 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029795ENSMUST00000098877ENSMUST00000107292ENSMUST00000126783
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029795 4.184±0.51 7.114±3.29 4.190±1.14 0.568±0.15 8.831±3.98 17.797±4.59 9.162±1.39 9.238±2.16 8.338±7.20 2.168±0.50 26.715±2.39 4.545±1.50 0.182±0.06 0.515±0.14
ENSMUST00000098877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00
ENSMUST00000107292 0.791±0.12 N/A 1.406±0.00 N/A 2.201±0.74 2.021±0.00 N/A 1.811±0.21 1.974±1.44 0.482±0.06 5.090±0.64 2.811±1.04 0.082±0.05 N/A
ENSMUST00000126783 0.616±0.00 N/A N/A N/A 2.227±0.00 N/A N/A N/A 0.060±0.00 0.397±0.00 N/A 1.385±0.10 0.034±0.01 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001223 IPI transcription coactivator binding
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006468 IMP protein phosphorylation
GO:0006805 IMP xenobiotic metabolic process
GO:0008142 IEA oxysterol binding
GO:0008270 IEA zinc ion binding
GO:0010906 IMP regulation of glucose metabolic process
GO:0019218 IMP regulation of steroid metabolic process
GO:0030154 IMP cell differentiation
GO:0030522 IEA intracellular receptor signaling pathway
GO:0032922 IMP circadian regulation of gene expression
GO:0033077 IMP T cell differentiation in thymus
GO:0036315 IEA cellular response to sterol
GO:0042093 IMP T-helper cell differentiation
GO:0042753 IDA positive regulation of circadian rhythm
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045586 IDA regulation of gamma-delta T cell differentiation
GO:0045598 IMP regulation of fat cell differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046632 IMP alpha-beta T cell differentiation
GO:0048535 IMP lymph node development
GO:0048537 IMP mucosal-associated lymphoid tissue development
GO:0048541 IMP Peyer's patch development
GO:0060612 IMP adipose tissue development
GO:0060850 IDA regulation of transcription involved in cell fate commitment
GO:0070244 IMP negative regulation of thymocyte apoptotic process
GO:0072539 IMP T-helper 17 cell differentiation
GO:0098531 IEA direct ligand regulated sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087195 RORC RAR-related orphan receptor C protein_coding Danio_rerio
ENSG00000143365 RORC RAR-related orphan receptor C protein_coding Homo_sapiens

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