C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAR-related orphan receptor gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029795 Rorc-001 ENSMUSG00000028150 10090 + 3:94372794-94397840 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029795
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029795 4.184±0.51 7.114±3.29 4.190±1.14 0.568±0.15 8.831±3.98 17.797±4.59 9.162±1.39 9.238±2.16 8.338±7.20 2.168±0.50 26.715±2.39 4.545±1.50 0.182±0.06 0.515±0.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001223 IPI transcription coactivator binding
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006468 IMP protein phosphorylation
GO:0006805 IMP xenobiotic metabolic process
GO:0008142 IEA oxysterol binding
GO:0008270 IEA zinc ion binding
GO:0010906 IMP regulation of glucose metabolic process
GO:0019218 IMP regulation of steroid metabolic process
GO:0030154 IMP cell differentiation
GO:0030522 IEA intracellular receptor signaling pathway
GO:0032922 IMP circadian regulation of gene expression
GO:0033077 IMP T cell differentiation in thymus
GO:0036315 IEA cellular response to sterol
GO:0042093 IMP T-helper cell differentiation
GO:0042753 IDA positive regulation of circadian rhythm
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045586 IDA regulation of gamma-delta T cell differentiation
GO:0045598 IMP regulation of fat cell differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046632 IMP alpha-beta T cell differentiation
GO:0048535 IMP lymph node development
GO:0048537 IMP mucosal-associated lymphoid tissue development
GO:0048541 IMP Peyer's patch development
GO:0060612 IMP adipose tissue development
GO:0060850 IDA regulation of transcription involved in cell fate commitment
GO:0070244 IMP negative regulation of thymocyte apoptotic process
GO:0072539 IMP T-helper 17 cell differentiation
GO:0098531 IEA direct ligand regulated sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000121449 roraa-201 protein_coding Danio_rerio 1e-25 122
ENSDART00000148537 roraa-001 protein_coding Danio_rerio 1e-25 122
ENSDART00000122742 rorcb-001 protein_coding Danio_rerio 8e-22 110
ENSDART00000100484 rorca-201 protein_coding Danio_rerio 2e-18 99
ENSDART00000079840 rorca-001 protein_coding Danio_rerio 2e-18 99
ENST00000318247 RORC-001 protein_coding Homo_sapiens 0 1877
ENST00000356728 RORC-002 protein_coding Homo_sapiens 0 1674
ENST00000480719 RORC-003 processed_transcript Homo_sapiens 0 329

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