C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: STRA6-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028327 1300002K09Rik 10090 + 4:45848664-45887008 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030011 1300002K09Rik-201 45848947-45887008 protein_coding
  ENSMUST00000107782 1300002K09Rik-002 45848816-45887008 protein_coding
  ENSMUST00000107783 1300002K09Rik-001 45848664-45887008 protein_coding
  ENSMUST00000128947 1300002K09Rik-003 45848997-45860016 processed_transcript
  ENSMUST00000165478 1300002K09Rik-004 45874211-45886618 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030011ENSMUST00000107782ENSMUST00000107783ENSMUST00000128947ENSMUST00000165478
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030011 1.006±0.89 0.145±0.05 0.106±0.00 0.576±0.50 0.441±0.04 3.531±1.36 0.020±0.01 3.372±0.47 49.377±44.70 0.367±0.07 0.017±0.00 0.392±0.20 1.118±0.70 0.067±0.02
ENSMUST00000107782 N/A 0.136±0.00 N/A N/A 0.074±0.00 N/A N/A N/A N/A 0.102±0.05 N/A 0.154±0.00 N/A N/A
ENSMUST00000107783 N/A N/A 0.184±0.00 N/A 0.103±0.00 2.067±0.64 N/A 0.694±0.00 N/A N/A N/A N/A 0.159±0.06 N/A
ENSMUST00000128947 N/A 0.263±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165478 0.279±0.27 0.083±0.02 0.036±0.00 0.173±0.12 0.085±0.05 1.374±0.39 N/A 0.365±0.04 4.568±4.97 0.076±0.02 N/A 0.091±0.04 0.126±0.16 0.026±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086Q CIL_00086Q_0002 VISTA 4:45528456-46131469

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0034633 IGI retinol transport
GO:0071939 IMP vitamin A import

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062467 zgc:162946 zgc:162946 protein_coding Danio_rerio

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