C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tropomodulin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028328 Tmod1 10090 + 4:46038935-46116032 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000107773 Tmod1-001 46038935-46116032 protein_coding
  ENSMUST00000128689 Tmod1-003 46077127-46099708 processed_transcript
  ENSMUST00000136553 Tmod1-004 46082847-46090881 processed_transcript
  ENSMUST00000155730 Tmod1-005 46100243-46114439 processed_transcript
  ENSMUST00000156200 Tmod1-002 46039209-46090897 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverLungMuscleENSMUST00000107773ENSMUST00000128689
Transcript ID Brain Breast Heart Liver Lung Muscle
ENSMUST00000107773 6.679±0.00 8.566±1.54 29.208±7.05 13.218±7.66 10.788±0.41 21.379±0.93
ENSMUST00000128689 22.843±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086Q CIL_00086Q_0002 VISTA 4:45528456-46131469
CIL_0007HJ CIL_0007HJ_0003 CGP 4:45965334-46116032
CIL_0002JE CIL_0002JE_0002 CGP 4:46038935-46138694

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005523 IDA tropomyosin binding
GO:0005856 TAS cytoskeleton
GO:0006936 IMP muscle contraction
GO:0008180 IEA COP9 signalosome
GO:0008344 IMP adult locomotory behavior
GO:0016020 IDA membrane
GO:0030016 IDA myofibril
GO:0030239 IMP myofibril assembly
GO:0030863 IDA cortical cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078318 tmod1 tropomodulin 1 protein_coding Danio_rerio
ENSG00000136842 TMOD1 tropomodulin 1 protein_coding Homo_sapiens

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