C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomodulin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107773 Tmod1-001 ENSMUSG00000028328 10090 + 4:46038935-46116032 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverLungMuscleENSMUST00000107773
Transcript ID Brain Breast Heart Liver Lung Muscle
ENSMUST00000107773 6.679±0.00 8.566±1.54 29.208±7.05 13.218±7.66 10.788±0.41 21.379±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086Q CIL_00086Q_0002 VISTA 4:45528456-46131469
CIL_0007HJ CIL_0007HJ_0003 CGP 4:45965334-46116032
CIL_0002JE CIL_0002JE_0002 CGP 4:46038935-46138694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005523 IDA tropomyosin binding
GO:0005856 TAS cytoskeleton
GO:0006936 IMP muscle contraction
GO:0008180 IEA COP9 signalosome
GO:0008344 IMP adult locomotory behavior
GO:0016020 IDA membrane
GO:0030016 IDA myofibril
GO:0030239 IMP myofibril assembly
GO:0030863 IDA cortical cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259365 TMOD1-001 protein_coding Homo_sapiens 0 1506
ENST00000375175 TMOD1-002 protein_coding Homo_sapiens 0 961
ENST00000395211 TMOD1-201 protein_coding Homo_sapiens 0 1506

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