C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 1110017D15 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028441 1110017D15Rik 10090 - 4:41505009-41517333 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030152 1110017D15Rik-001 41505009-41517333 protein_coding
  ENSMUST00000095126 1110017D15Rik-006 41505009-41517333 protein_coding
  ENSMUST00000123356 1110017D15Rik-003 41505009-41507754 processed_transcript
  ENSMUST00000123865 1110017D15Rik-004 41505009-41507759 processed_transcript
  ENSMUST00000124019 1110017D15Rik-002 41505009-41507764 processed_transcript
  ENSMUST00000125303 1110017D15Rik-005 41505009-41511467 protein_coding
  ENSMUST00000134546 1110017D15Rik-007 41507125-41517328 processed_transcript
  ENSMUST00000138217 1110017D15Rik-008 41508534-41508964 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030152ENSMUST00000095126ENSMUST00000123356ENSMUST00000123865ENSMUST00000124019ENSMUST00000125303ENSMUST00000134546
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030152 0.055±0.00 0.087±0.00 0.067±0.00 0.553±0.19 0.065±0.01 N/A 0.159±0.04 0.098±0.03 0.036±0.02 N/A N/A N/A 0.196±0.12 263.589±111.68
ENSMUST00000095126 0.049±0.00 N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.136±0.06 106.754±1.78
ENSMUST00000123356 0.048±0.02 0.218±0.09 0.055±0.00 N/A 0.164±0.00 0.191±0.00 N/A 0.042±0.00 0.054±0.00 N/A N/A 3.192±0.30 N/A N/A
ENSMUST00000123865 0.063±0.01 N/A N/A 1.877±0.38 N/A 0.147±0.00 0.556±0.00 0.087±0.00 0.059±0.00 N/A 0.209±0.10 13.481±0.96 0.954±0.77 N/A
ENSMUST00000124019 0.115±0.00 N/A 0.061±0.00 0.736±0.18 0.250±0.00 0.038±0.00 0.740±0.05 0.137±0.00 0.072±0.05 19.615±3.01 N/A 11.889±4.75 0.548±0.00 N/A
ENSMUST00000125303 0.081±0.00 N/A 0.031±0.00 0.600±0.04 0.206±0.14 0.126±0.09 0.265±0.05 0.071±0.03 0.015±0.00 N/A N/A N/A 0.211±0.14 N/A
ENSMUST00000134546 N/A N/A N/A N/A N/A 0.141±0.00 N/A 0.069±0.03 0.017±0.00 N/A N/A N/A 0.120±0.00 20.666±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IW CIL_0005IW_0002 CGP 4:41495604-41517333
CIL_0005IP CIL_0005IP_0002 CGP 4:41505009-41569538

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002177 IDA manchette
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0007283 IEA spermatogenesis
GO:0030154 IEA cell differentiation
GO:0043014 IDA alpha-tubulin binding
GO:0043623 IDA cellular protein complex assembly
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000164972 C9orf24 chromosome 9 open reading frame 24 protein_coding Homo_sapiens

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