C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 39A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028555 Ttc39a 10090 + 4:109406623-109444745 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064129 Ttc39a-001 109407087-109444745 protein_coding
  ENSMUST00000106618 Ttc39a-002 109415648-109444382 protein_coding
  ENSMUST00000106619 Ttc39a-003 109407110-109424238 protein_coding
  ENSMUST00000124209 Ttc39a-004 109406623-109428134 protein_coding
  ENSMUST00000126797 Ttc39a-008 109407129-109422942 processed_transcript
  ENSMUST00000139237 Ttc39a-007 109420942-109426365 protein_coding
  ENSMUST00000150909 Ttc39a-006 109415774-109421377 processed_transcript
  ENSMUST00000153315 Ttc39a-005 109414776-109428202 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064129ENSMUST00000106618ENSMUST00000106619ENSMUST00000124209ENSMUST00000126797
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064129 1.702±1.47 3.837±0.77 3.985±0.80 0.406±0.00 5.462±0.59 63.147±2.90 0.418±0.20 1.198±0.15 3.633±4.52 6.752±0.46 0.067±0.00 6.474±1.83 12.336±3.41 11.723±2.21
ENSMUST00000106618 N/A N/A N/A N/A N/A N/A 0.250±0.05 N/A N/A N/A 0.025±0.00 1.952±0.30 4.401±1.80 65.267±28.07
ENSMUST00000106619 N/A N/A N/A N/A 0.987±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124209 N/A 3.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126797 N/A N/A N/A N/A 3.852±0.00 23.962±0.00 0.401±0.00 N/A 0.256±0.13 N/A 0.030±0.00 4.078±0.48 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074126 ttc39a tetratricopeptide repeat domain 39A protein_coding Danio_rerio
ENSDARG00000088527 TTC39A (2 of 2) tetratricopeptide repeat domain 39A protein_coding Danio_rerio
ENSG00000085831 TTC39A tetratricopeptide repeat domain 39A protein_coding Homo_sapiens

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