C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 39A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000085831 TTC39A 9606 - 1:51287258-51345116 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262675 TTC39A-017 51287812-51330173 protein_coding
  ENST00000262676 TTC39A-002 51297218-51331346 protein_coding
  ENST00000371747 TTC39A-003 51295538-51330562 protein_coding
  ENST00000371750 TTC39A-005 51287970-51322258 protein_coding
  ENST00000380849 TTC39A-007 51306024-51330202 protein_coding
  ENST00000401051 TTC39A-010 51309392-51345116 protein_coding
  ENST00000411642 TTC39A-012 51301705-51330947 protein_coding
  ENST00000413473 TTC39A-001 51287258-51345116 protein_coding
  ENST00000422925 TTC39A-008 51303084-51325976 protein_coding
  ENST00000431927 TTC39A-009 51294458-51305593 processed_transcript
  ENST00000439482 TTC39A-006 51302357-51330564 protein_coding
  ENST00000447632 TTC39A-004 51287258-51322210 protein_coding
  ENST00000524442 TTC39A-016 51301393-51303158 processed_transcript
  ENST00000525906 TTC39A-018 51290092-51296860 protein_coding
  ENST00000527205 TTC39A-011 51311257-51345116 protein_coding
  ENST00000530004 TTC39A-013 51287258-51297990 protein_coding
  ENST00000532836 TTC39A-015 51309399-51325953 protein_coding
  ENST00000534098 TTC39A-014 51287986-51297960 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262675ENST00000262676ENST00000371750ENST00000380849ENST00000413473ENST00000422925ENST00000431927ENST00000439482ENST00000524442ENST00000525906ENST00000530004ENST00000534098
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262675 N/A 0.230±0.00 N/A N/A N/A 1.903±0.00 N/A N/A N/A N/A 2.710±0.00 N/A N/A
ENST00000262676 N/A 0.109±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.151±0.00 0.039±0.03 N/A
ENST00000371750 N/A N/A N/A N/A 1.772±0.00 N/A N/A N/A 1.554±0.00 N/A 0.891±0.61 N/A 11.901±0.00
ENST00000380849 N/A N/A N/A N/A N/A N/A 0.177±0.00 N/A N/A N/A N/A N/A N/A
ENST00000413473 N/A N/A 0.601±0.00 N/A 1.024±0.00 2.676±0.00 14.350±0.00 N/A 0.485±0.00 0.517±0.00 N/A 0.095±0.00 N/A
ENST00000422925 N/A N/A N/A N/A N/A N/A N/A 0.211±0.00 N/A N/A N/A 0.242±0.00 N/A
ENST00000431927 N/A N/A N/A 6.625±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439482 N/A N/A 1.222±0.00 N/A N/A N/A N/A N/A N/A N/A 4.721±0.00 N/A 28.142±0.00
ENST00000524442 N/A N/A N/A N/A N/A N/A N/A 1.565±0.00 N/A N/A N/A N/A N/A
ENST00000525906 0.568±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.754±0.00 0.350±0.00 43.155±0.00
ENST00000530004 0.136±0.00 N/A N/A 2.837±0.00 N/A 0.565±0.16 5.659±0.00 N/A N/A N/A 0.426±0.00 0.102±0.07 N/A
ENST00000534098 0.168±0.00 N/A N/A N/A N/A 0.767±0.00 N/A N/A N/A 0.875±0.00 1.220±0.00 0.190±0.01 11.708±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WB CIL_0006WB_0002 CGP 1:51236271-51345116
CIL_0006W8 CIL_0006W8_0002 CGP 1:51287258-51519328

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074126 ttc39a tetratricopeptide repeat domain 39A protein_coding Danio_rerio
ENSDARG00000088527 TTC39A (2 of 2) tetratricopeptide repeat domain 39A protein_coding Danio_rerio
ENSMUSG00000028555 Ttc39a tetratricopeptide repeat domain 39A protein_coding Mus_musculus

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