C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil and C2 domain containing 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028582 Cc2d1b 10090 + 4:108619940-108634123 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030320 Cc2d1b-001 108619940-108634123 protein_coding
  ENSMUST00000106665 Cc2d1b-003 108626048-108634105 retained_intron
  ENSMUST00000126156 Cc2d1b-007 108629590-108630402 retained_intron
  ENSMUST00000134844 Cc2d1b-002 108623563-108634123 protein_coding
  ENSMUST00000139962 Cc2d1b-004 108623512-108626006 nonsense_mediated_decay
  ENSMUST00000143336 Cc2d1b-008 108630450-108633263 retained_intron
  ENSMUST00000150199 Cc2d1b-005 108625755-108626762 retained_intron
  ENSMUST00000176846 Cc2d1b-010 108626020-108627103 retained_intron
  ENSMUST00000176877 Cc2d1b-009 108629624-108630433 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030320ENSMUST00000106665ENSMUST00000134844ENSMUST00000139962ENSMUST00000143336
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030320 13.922±2.35 14.861±1.62 10.663±1.88 13.534±3.79 12.326±1.27 11.469±1.65 4.438±0.57 9.323±0.65 5.129±2.26 12.105±1.41 6.030±0.48 10.494±3.38 23.756±4.66 11.469±0.66
ENSMUST00000106665 3.697±0.00 4.090±0.68 2.211±0.00 3.078±1.04 3.155±0.36 3.451±0.14 N/A N/A N/A 3.323±0.00 N/A 4.187±0.78 7.081±0.00 N/A
ENSMUST00000134844 2.994±0.00 N/A N/A N/A 2.818±0.46 5.227±0.00 N/A 3.704±0.00 1.255±0.00 N/A 1.464±0.00 6.106±1.87 N/A 3.249±0.57
ENSMUST00000139962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.152±0.00 N/A 68.225±0.00
ENSMUST00000143336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 123.773±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075120 cc2d1b coiled-coil and C2 domain containing 1B protein_coding Danio_rerio
ENSG00000154222 CC2D1B coiled-coil and C2 domain containing 1B protein_coding Homo_sapiens

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