C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil and C2 domain containing 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154222 CC2D1B 9606 - 1:52345723-52366193 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000284376 CC2D1B-003 52352532-52366179 protein_coding
  ENST00000371586 CC2D1B-001 52350593-52366193 protein_coding
  ENST00000438021 CC2D1B-002 52352538-52360196 protein_coding
  ENST00000450942 CC2D1B-004 52353519-52360548 protein_coding
  ENST00000460261 CC2D1B-007 52353089-52361100 processed_transcript
  ENST00000460370 CC2D1B-010 52353531-52355666 retained_intron
  ENST00000470844 CC2D1B-012 52345723-52354865 processed_transcript
  ENST00000485966 CC2D1B-009 52354887-52356560 retained_intron
  ENST00000491136 CC2D1B-005 52352532-52366156 retained_intron
  ENST00000492426 CC2D1B-011 52354655-52354965 retained_intron
  ENST00000494789 CC2D1B-008 52356255-52356813 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284376ENST00000371586ENST00000438021ENST00000491136
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284376 5.650±0.00 N/A 1.750±0.00 3.607±1.70 5.389±0.00 2.318±1.52 8.256±0.00 2.022±0.00 9.661±0.00 16.497±0.00 6.015±3.29 7.961±0.89 13.536±1.06
ENST00000371586 1.525±0.00 2.562±0.00 0.483±0.00 1.399±0.48 0.979±0.00 N/A 2.006±0.89 1.340±0.00 1.321±0.00 N/A 1.773±0.00 N/A N/A
ENST00000438021 N/A N/A N/A N/A N/A N/A N/A 2.383±0.00 N/A 9.321±0.00 N/A 3.009±0.00 N/A
ENST00000491136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.285±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006W9 CIL_0006W9_0002 CGP 1:52142094-52366193

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075120 cc2d1b coiled-coil and C2 domain containing 1B protein_coding Danio_rerio
ENSMUSG00000028582 Cc2d1b coiled-coil and C2 domain containing 1B protein_coding Mus_musculus

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