C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 23
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028643 Ccdc23 10090 + 4:119195306-119201298 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030395 Ccdc23-001 119195306-119201298 protein_coding
  ENSMUST00000097908 Ccdc23-003 119195496-119201298 protein_coding
  ENSMUST00000106345 Ccdc23-002 119195407-119201298 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030395ENSMUST00000097908ENSMUST00000106345
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030395 15.665±1.52 14.381±1.95 22.557±2.17 39.495±23.33 13.395±4.92 16.976±2.47 9.246±0.65 14.939±1.84 23.026±19.88 10.814±1.02 10.118±0.78 19.308±5.95 20.033±7.17 12.749±0.00
ENSMUST00000097908 2.612±0.36 1.819±0.31 N/A 6.496±1.49 N/A 2.515±0.32 N/A N/A N/A 1.527±0.05 N/A 3.600±0.86 2.656±1.12 102.952±6.48
ENSMUST00000106345 N/A N/A N/A N/A N/A N/A N/A N/A 0.954±0.31 N/A N/A 4.683±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N2 CIL_0008N2_0002 VISTA 4:118719151-119320076
CIL_0008PM CIL_0008PM_0002 VISTA 4:118938785-119540197

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0009306 IEA protein secretion
GO:0010596 IEA negative regulation of endothelial cell migration
GO:0031397 IEA negative regulation of protein ubiquitination
GO:0045177 IEA apical part of cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086898 CCDC23 Coiled-coil domain-containing protein 23 (ccdc23), mRNA protein_coding Danio_rerio
ENSG00000177868 CCDC23 coiled-coil domain containing 23 protein_coding Homo_sapiens

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