C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028700 Pomgnt1 10090 + 4:116123840-116159849 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000106494 Pomgnt1-003 116151431-116159437 protein_coding
  ENSMUST00000106496 Pomgnt1-002 116150525-116159844 protein_coding
  ENSMUST00000106498 Pomgnt1-001 116150518-116159844 protein_coding
  ENSMUST00000120083 Pomgnt1-011 116137237-116159848 protein_coding
  ENSMUST00000121052 Pomgnt1-010 116137755-116159844 protein_coding
  ENSMUST00000127426 Pomgnt1-006 116155937-116156653 retained_intron
  ENSMUST00000133838 Pomgnt1-005 116155319-116158994 retained_intron
  ENSMUST00000136855 Pomgnt1-008 116137252-116159849 retained_intron
  ENSMUST00000144311 Pomgnt1-009 116123840-116138850 processed_transcript
  ENSMUST00000147612 Pomgnt1-004 116154595-116155792 processed_transcript
  ENSMUST00000151325 Pomgnt1-012 116157392-116159025 retained_intron
  ENSMUST00000155718 Pomgnt1-007 116155949-116159058 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106494ENSMUST00000106496ENSMUST00000106498ENSMUST00000121052ENSMUST00000133838
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.992±9.15
ENSMUST00000106496 N/A N/A N/A N/A 14.423±0.00 N/A N/A N/A N/A N/A N/A 5.523±0.00 6.863±0.00 1.997±0.00
ENSMUST00000106498 20.240±3.68 16.727±4.10 23.620±2.94 20.174±4.61 17.697±4.87 12.443±1.93 17.186±3.58 20.343±2.18 6.880±1.63 20.236±0.46 22.600±1.13 17.436±7.76 21.504±4.72 23.967±1.85
ENSMUST00000121052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.854±2.32 47.117±1.52 N/A
ENSMUST00000133838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.351±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001N5 CIL_0001N5_0002 CGP 4:116123840-116159849

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0006493 IMP protein O-linked glycosylation
GO:0016021 IEA integral component of membrane
GO:0047223 IEA beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052025 pomgnt1 protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase protein_coding Danio_rerio
ENSG00000085998 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) protein_coding Homo_sapiens

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