C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NOL1/NOP2/Sun domain family, member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028706 Nsun4 10090 - 4:116032842-116053876 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030474 Nsun4-002 116033005-116048490 nonsense_mediated_decay
  ENSMUST00000030475 Nsun4-001 116032842-116053876 protein_coding
  ENSMUST00000136655 Nsun4-004 116040069-116046960 processed_transcript
  ENSMUST00000151720 Nsun4-003 116048460-116049396 processed_transcript
  ENSMUST00000152712 Nsun4-005 116044555-116048359 retained_intron
  ENSMUST00000165493 Nsun4-006 116033907-116053380 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030474ENSMUST00000030475ENSMUST00000165493
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030474 N/A N/A N/A N/A 1.270±0.00 N/A N/A N/A N/A N/A N/A 1.048±0.00 0.377±0.00 N/A
ENSMUST00000030475 5.133±0.28 6.355±0.60 3.381±0.22 2.170±1.31 4.988±1.24 3.045±0.40 11.098±0.67 6.951±0.44 5.072±0.83 8.732±1.35 6.525±0.26 5.029±1.48 3.359±2.32 N/A
ENSMUST00000165493 N/A N/A N/A N/A 0.211±0.01 N/A N/A N/A N/A N/A N/A N/A N/A 64.130±29.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005762 ISO mitochondrial large ribosomal subunit
GO:0008168 IEA methyltransferase activity
GO:0031167 IMP rRNA methylation
GO:0042256 IMP mature ribosome assembly
GO:0070131 IMP positive regulation of mitochondrial translation
GO:0070181 IDA small ribosomal subunit rRNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021324 nsun4 NOL1/NOP2/Sun domain family, member 4 protein_coding Danio_rerio
ENSG00000117481 NSUN4 NOP2/Sun domain family, member 4 protein_coding Homo_sapiens

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