C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOL1/NOP2/Sun domain family, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030475 Nsun4-001 ENSMUSG00000028706 10090 - 4:116032842-116053876 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000030475
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000030475 5.133±0.28 6.355±0.60 3.381±0.22 2.170±1.31 4.988±1.24 3.045±0.40 11.098±0.67 6.951±0.44 5.072±0.83 8.732±1.35 6.525±0.26 5.029±1.48 3.359±2.32

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005762 ISO mitochondrial large ribosomal subunit
GO:0008168 IEA methyltransferase activity
GO:0031167 IMP rRNA methylation
GO:0042256 IMP mature ribosome assembly
GO:0070131 IMP positive regulation of mitochondrial translation
GO:0070181 IDA small ribosomal subunit rRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307089 NSUN4-003 nonsense_mediated_decay Homo_sapiens 0 739
ENST00000469918 NSUN4-007 nonsense_mediated_decay Homo_sapiens 0 551
ENST00000474844 NSUN4-001 protein_coding Homo_sapiens 0 1288
ENST00000475281 NSUN4-010 retained_intron Homo_sapiens 0 307
ENST00000486270 NSUN4-009 nonsense_mediated_decay Homo_sapiens 0 821
ENST00000495427 NSUN4-006 protein_coding Homo_sapiens 0 896
ENST00000498008 NSUN4-005 protein_coding Homo_sapiens 0 1203
ENST00000537428 NSUN4-004 protein_coding Homo_sapiens 0 1203

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