C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NOP2/Sun domain family, member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117481 NSUN4 9606 + 1:46340177-46365152 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307089 NSUN4-003 46340789-46365152 nonsense_mediated_decay
  ENST00000469918 NSUN4-007 46340820-46352958 nonsense_mediated_decay
  ENST00000472157 NSUN4-008 46340829-46341595 retained_intron
  ENST00000474844 NSUN4-001 46340177-46362191 protein_coding
  ENST00000475281 NSUN4-010 46344012-46345374 retained_intron
  ENST00000486270 NSUN4-009 46340802-46360828 nonsense_mediated_decay
  ENST00000495427 NSUN4-006 46343393-46362190 protein_coding
  ENST00000498008 NSUN4-005 46341836-46362192 protein_coding
  ENST00000537428 NSUN4-004 46341187-46362192 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307089ENST00000469918ENST00000474844ENST00000486270ENST00000495427ENST00000498008ENST00000537428
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307089 1.650±0.00 4.128±0.00 1.209±0.00 1.695±0.08 2.427±0.00 1.394±1.08 1.178±0.00 1.707±0.58 1.445±0.13 0.818±0.00 1.374±0.61 1.836±1.28 2.554±1.01 2.626±0.00
ENST00000469918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.801±0.00 N/A N/A N/A
ENST00000474844 1.511±0.00 2.859±0.00 0.605±0.00 0.955±0.00 1.904±0.00 1.341±0.00 1.016±0.48 N/A 1.968±0.00 1.938±0.00 1.799±0.00 1.746±1.24 3.152±0.22 N/A
ENST00000486270 N/A N/A N/A N/A N/A N/A N/A 1.518±0.00 N/A 6.960±0.00 N/A N/A N/A N/A
ENST00000495427 N/A N/A N/A N/A N/A N/A N/A N/A 0.650±0.00 N/A N/A N/A N/A 5.836±0.00
ENST00000498008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.553±5.24
ENST00000537428 N/A N/A N/A N/A N/A 0.650±0.00 N/A N/A N/A N/A N/A N/A N/A 12.271±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005762 IDA mitochondrial large ribosomal subunit
GO:0008168 IDA:IEA methyltransferase activity
GO:0019843 IEA rRNA binding
GO:0031167 IDA rRNA methylation
GO:0042256 IEA mature ribosome assembly
GO:0070131 IEA positive regulation of mitochondrial translation
GO:0070181 IEA small ribosomal subunit rRNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021324 nsun4 NOL1/NOP2/Sun domain family, member 4 protein_coding Danio_rerio
ENSMUSG00000028706 Nsun4 NOL1/NOP2/Sun domain family, member 4 protein_coding Mus_musculus

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