C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: MRT4, mRNA turnover 4, homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028741 Mrto4 10090 - 4:139347435-139352576 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030513 Mrto4-002 139347445-139352298 protein_coding
  ENSMUST00000102503 Mrto4-001 139347435-139352576 protein_coding
  ENSMUST00000123968 Mrto4-003 139349875-139352310 retained_intron
  ENSMUST00000128239 Mrto4-007 139348162-139349621 retained_intron
  ENSMUST00000131052 Mrto4-005 139347435-139349603 processed_transcript
  ENSMUST00000139749 Mrto4-006 139348760-139352533 retained_intron
  ENSMUST00000155257 Mrto4-004 139348698-139352311 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030513ENSMUST00000102503ENSMUST00000128239ENSMUST00000131052
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030513 N/A N/A N/A 16.603±0.00 1.624±0.00 N/A N/A N/A N/A N/A N/A 20.454±3.41 25.260±18.99 14.021±0.00
ENSMUST00000102503 6.584±1.66 7.850±2.17 15.608±1.53 12.410±1.51 4.837±1.36 4.399±1.03 4.692±0.30 5.351±0.84 16.641±14.98 4.125±0.79 14.702±0.96 8.568±5.43 19.539±13.97 18.507±5.16
ENSMUST00000128239 N/A N/A N/A N/A 1.907±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131052 5.924±3.34 5.565±2.03 N/A 7.699±1.94 3.114±0.71 2.269±1.34 3.791±0.27 4.694±1.11 8.597±4.33 5.626±0.43 N/A 12.723±5.05 7.679±4.86 26.168±2.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WO CIL_0003WO_0002 CGP 4:139310744-139352576

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005840 IEA ribosome
GO:0008150 ND biological_process
GO:0031965 IEA nuclear membrane
GO:0042254 IEA ribosome biogenesis
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007130 mrto4 mRNA turnover 4 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000053372 MRTO4 mRNA turnover 4 homolog (S. cerevisiae) protein_coding Homo_sapiens

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