C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SYF2 homolog, RNA splicing factor (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028821 Syf2 10090 + 4:134930898-134937548 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030622 Syf2-001 134930898-134937548 protein_coding
  ENSMUST00000144037 Syf2-003 134931010-134936078 retained_intron
  ENSMUST00000156334 Syf2-002 134930902-134935049 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030622ENSMUST00000144037
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030622 15.099±2.57 6.511±1.71 44.273±1.76 22.029±4.74 9.665±1.52 9.305±1.31 13.573±1.92 17.722±3.67 21.584±15.29 22.079±2.77 19.997±1.47 15.444±17.91 37.504±3.03 15.901±1.71
ENSMUST00000144037 N/A N/A N/A N/A N/A 2.261±0.00 N/A N/A N/A N/A N/A N/A N/A 22.352±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZX CIL_0007ZX_0002 VISTA 4:134905845-135507207

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0007095 IMP mitotic G2 DNA damage checkpoint
GO:0007369 IMP gastrulation
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0048568 IMP embryonic organ development
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004706 syf2 SYF2 homolog, RNA splicing factor (S. cerevisiae) protein_coding Danio_rerio
ENSG00000117614 SYF2 SYF2 pre-mRNA-splicing factor protein_coding Homo_sapiens

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